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Record W4401648995 · doi:10.5376/gab.2024.15.0010

Comparative Genomics: Insights into the Evolutionary History of <i>Eucommia ulmoides</i>

2024· article· en· W4401648995 on OpenAlexvenueno aff
Xin Xie, Atul Kumar Srivastava, Mehran Khan, Yichen Zhao, Degang Zhao

Bibliographic record

VenueGenomics and Applied Biology · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Ecology and Taxonomy Studies
Canadian institutionsnot available
FundersGuizhou Academy of Agricultural SciencesNational Natural Science Foundation of China
KeywordsEucommia ulmoidesGenomicsBiologyGeneticsGeneGenomeMedicine

Abstract

fetched live from OpenAlex

Eucommia ulmoides , commonly known as the hardy rubber tree, is a unique and economically significant tree species with applications in rubber production as well as traditional medicine. This review delves into the evolutionary history of E. ulmoides through comparative genomics, highlighting key findings from recent genomic studies. High-quality genome assemblies have revealed significant insights into the genetic architecture and evolutionary mechanisms of this tree. Notably, the genome of E. ulmoides has undergone a whole-genome duplication event, contributing to its complex genomic structure and the expansion of gene families involved in rubber biosynthesis and stress responses. Comparative analyses of chloroplast genomes have identified heterogeneous sequence divergence and mutation hotspots, providing valuable information for conservation genetics. Transcriptome studies have uncovered sex-biased gene expression and potential sex-determination genes, shedding light on the genetic basis of sexual dimorphism in this dioecious species. Additionally, high-density genetic maps and QTL analysis have facilitated the identification of growth-related traits, paving the way for genetic improvement and breeding programs. This review presents a comprehensive understanding of the evolutionary history and genomic innovations of E. ulmoides , offering new perspectives for its conservation and utilization.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.002
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.201
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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