Optimizing SEM parameters for segmentation with AI – Part 2: Designing and training a regression model
Bibliographic record
Abstract
Selecting the best microscope parameters for optimal image quality currently relies on microscopists; there exist no procedures or guidelines for tuning parameters to ensure the desired image quality is achieved. More importantly, for quantitative analysis purposes, adequate image quality for segmentation should be prioritized. This paper is the second of two parts, describing a regression model, mixed input, multiple output with Keras TensorFlow, trained to predict the beam energy and probe current, two important parameters for image quality. Specifically, parameters are predicted to optimize the image quality for segmentation, using a generated training set, as described in Part 1 of this paper. Model performance is then tested on models trained with multiple different training sets, and with different proportions of simulated and acquired data. First, to examine the impact of the training set on the prediction accuracy and then, to evaluate the importance of including real data during training. The model successfully predicted the beam energy and probe current to set on the microscope to improve image quality for segmentation. Models trained with both simulated and acquired data performed the best, as evaluated by their efficacy at improving the image quality for feature segmentation.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.004 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.001 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.001 | 0.000 |
| Research integrity | 0.001 | 0.002 |
| Insufficient payload (model declined to judge) | 0.003 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".