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Record W4402038323 · doi:10.1101/2024.08.28.610193

Brain Charts for the Rhesus Macaque Lifespan

2024· preprint· en· W4402038323 on OpenAlexaff
Samuel Alldritt, J.S.B. Ramirez, Reinder Vos de Wael, Richard A. I. Bethlehem, Jakob Seidlitz, Z. Wang, Karl‐Heinz Nenning, Nathália Bianchini Esper, Jonny Smallwood, Alexandre R. Franco, Kyoungseob Byeon, Aaron Alexander‐Bloch, David G. Amaral, Céline Amiez, Fabien Balezeau, Mark G. Baxter, Guillaume Becker, Jeffrey Bennett, Olivia Berkner, Erwin L. A. Blezer, Ansgar M. Brambrink, Thomas Brochier, Beth Butler, L.J. Campos, Emmanuelle Canet‐Soulas, Lucie Chalet, Ang Chen, Justine Cléry, Christos Constantinidis, Douglas J. Cook, Stanislas Dehaene, Lena Dorfschmidt, Carly M. Drzewiecki, John W. Erdman, Stefan Everling, Arnaud Falchier, Lazar Fleysher, Andrew J. Fox, Winrich A. Freiwald, Mathilda Froesel, Seán Froudist‐Walsh, Judy Fudge, Thomas Funck, Maëva Gacoin, Daniel J. Gale, Joanne Gallivan, Clément M. Garin, Timothy D. Griffiths, Carole Guedj, Fadila Hadj‐Bouziane, Suliann Ben Hamed, Noam Harel, Roland Hartig, Bassem Hiba, B.R. Howell, Béchir Jarraya, Benjamin Jung, Ned H. Kalin, J. Karpf, Sabine Kästner, P. Christiaan Klink, Zsofia A. Kovacs-Balint, Christopher D. Kroenke, Matthew J. Kuchan, Sze Chai Kwok, Kevin N. Laland, David A. Leopold, Gang Li, Patrik Lindenfors, Gary Linn, Rogier B. Mars, Kurt Masiello, Ravi S. Menon, Adam Messinger, Martine Meunier, Kin Y. Mok, John H. Morrison, Jennifer Nacef, Júlia Nagy, Viola Neudecker, Martha Neuringer, MaryAnn P. Noonan, Michael Ortiz-Rios, Jose F. Perez‐Zoghbi, Christopher I. Petkov, Mark A. Pinsk, Colline Poirier, Emmanuel Procyk, Reza Rajimehr, Simon M. Reader, David A. Rudko, Matthew F. S. Rushworth, Brendan E. Russ, Jérôme Sallet, Mar M. Sánchez, MC Schmid, Caspar M. Schwiedrzik, Jonathan Scott, Julien Sein, KK Sharma, Amir Shmuel, Martin Styner, Elinor L. Sullivan, Alexander Thiele, Orlin S. Todorov, Doris Y. Tsao, Anita Tusche, Roza Vlasova, Li Wang, Jiarui Wang, Astrid Weiss, Charles Wilson, Essa Yacoub, Wilbert Zarco, Yun Zhou, Junda Zhu, Daniel S. Margulies, Damien A. Fair, Charles M. Schroeder, Michael P. Milham, Ting Xu

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsWestern UniversityQueen's UniversityMcGill University
Fundersnot available
KeywordsMacaqueRhesus macaquePrimateBrain sizeNeuroscienceNormativeCognitionPsychologyBiologyHealthy agingMedicineMagnetic resonance imagingGerontology

Abstract

fetched live from OpenAlex

Recent efforts to chart human brain growth across the lifespan using large-scale MRI data have provided reference standards for human brain development. However, similar models for nonhuman primate (NHP) growth are lacking. The rhesus macaque, a widely used NHP in translational neuroscience due to its similarities in brain anatomy, phylogenetics, cognitive, and social behaviors to humans, serves as an ideal NHP model. This study aimed to create normative growth charts for brain structure across the macaque lifespan, enhancing our understanding of neurodevelopment and aging, and facilitating cross-species translational research. Leveraging data from the PRIMatE Data Exchange (PRIME-DE) and other sources, we aggregated 1,522 MRI scans from 1,024 rhesus macaques. We mapped non-linear developmental trajectories for global and regional brain structural changes in volume, cortical thickness, and surface area over the lifespan. Our findings provided normative charts with centile scores for macaque brain structures and revealed key developmental milestones from prenatal stages to aging, highlighting both species-specific and comparable brain maturation patterns between macaques and humans. The charts offer a valuable resource for future NHP studies, particularly those with small sample sizes. Furthermore, the interactive open resource (https://interspeciesmap.childmind.org) supports cross-species comparisons to advance translational neuroscience research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.014
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.015
Threshold uncertainty score0.032

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.014
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0070.004
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0100.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.253
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2024
Admission routes1
Has abstractyes

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