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Record W4402242142 · doi:10.1080/07060661.2024.2392610

SIGS vs. HIGS: opportunities and challenges of RNAi pest and pathogen control strategies

2024· article· en· W4402242142 on OpenAlexafffundvenue
Bliss M. Beernink, Nazanin Amanat, Vivian H. Li, Christopher L. Manchur, Steve Whyard, Mark F. Belmonte

Bibliographic record

VenueCanadian Journal of Plant Pathology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInsect Resistance and Genetics
Canadian institutionsUniversity of Manitoba
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsPathogenPEST analysisRNA interferencePest controlBiologyAgronomyMicrobiologyBotanyGeneticsGene

Abstract

fetched live from OpenAlex

Insect pests and fungal pathogens are estimated to cause 20–40% yield reduction to crops annually, causing $290 billion of economic loss every season worldwide. Pest and pathogen impacts are a persistent and ever-increasing problem for global food production, especially due to climate change and growing populations. Frequent use of chemical pesticides has resulted in increased resistance among pests and pathogens due to the strong selection pressure that the pesticides exert, resulting in the rapid accumulation of mutations that confer behavioural, mechanical and/or biochemical resistance within the pest populations. Due to rising resistance and increasing interest in control measures with low environmental impact, there is an immediate need to find alternative pest and pathogen management strategies. RNA interference (RNAi) has been developed as a control strategy by exploiting inherent cellular defence processes, providing a species-specific biological approach to crop management. Delivery of double-stranded RNA (dsRNA) can be accomplished non-transgenically by spray-induced gene silencing (SIGS), virus-mediated host-induced gene silencing (VmHIGS) or transgenically through host-induced gene silencing (HIGS), specifically targeting pest and pathogen messenger RNAs with sequence homology. Accomplishing effective RNAi strategies requires consideration into how SIGS, VmHIGS, and HIGS approaches intersect with the crop species and pest or pathogen being targeted. Additional technical advancements for the delivery and uptake of dsRNAs, messenger RNA target identification and the possibility of insect or fungal dsRNA resistance are currently being explored. These considerations will enhance the utility, ease of use and implementation of both spray-based and transgenic applications of RNAi technology for improved food security.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.003
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0010.002
Scholarly communication0.0030.004
Open science0.0010.001
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.212
Teacher spread0.191 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations22
Published2024
Admission routes3
Has abstractyes

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