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Record W4402406740 · doi:10.1016/j.gimo.2024.101893

Identification of an intronic Alu insertion in the SYNE1 gene associated with autosomal recessive spinocerebellar ataxia type 8

2024· article· en· W4402406740 on OpenAlexaffabout
M Gagnon, Nadia Bouhamdani, Dimiter P Kolev, S. Hussain Askree, Mouna Ben Amor

Bibliographic record

VenueGenetics in Medicine Open · 2024
Typearticle
Languageen
FieldNeuroscience
TopicGenetic Neurodegenerative Diseases
Canadian institutionsVitalité Health NetworkAtlantic Cancer Research InstituteUniversité de MonctonUniversité de Sherbrooke
Fundersnot available
KeywordsGeneticsSpinocerebellar ataxiaIdentification (biology)BiologyGene

Abstract

fetched live from OpenAlex

The spectrin repeat-containing nuclear envelope protein 1 (SYNE1; HGNC:17089) gene, which is located on chromosome 6q25 and contains 146 exons, encodes protein isoforms nesprin-1 and nesprin-2, both of which are important for maintaining the structure and function of the cerebellum.1,2 Variants in SYNE1 are associated with slowly progressive cerebellar syndromes with an adult onset, including autosomal recessive cerebellar ataxia type 1 or spinocerebellar ataxia type 8 (ARCA1/ SCAR8, [OMIM: 610743]), also known as ataxia of Beauce, named after the region in Quebec, Canada, with high prevalence of the disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.018

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.048
GPT teacher head0.342
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

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