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Record W4402617500 · doi:10.1093/plankt/fbae046

Combining <i>in situ</i> and <i>ex situ</i> plankton image data to reconstruct zooplankton (&amp;gt;1 mm) volume and mass distribution in the global ocean

2024· article· en· W4402617500 on OpenAlexfundno aff
Yawouvi Dodji Soviadan, Mathilde Dugenne, Laetitia Drago, Tristan Biard, Emilia Trudnowska, Fabien Lombard, Jean‐Baptiste Romagnan, Jean‐Louis Jamet, Rainer Kiko, Gabriel Gorsky, Lars Stemmann

Bibliographic record

VenueJournal of Plankton Research · 2024
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine and coastal ecosystems
Canadian institutionsnot available
FundersAgence Nationale de la RechercheCanada Foundation for InnovationEuropean Molecular Biology Laboratory
KeywordsZooplanktonPlanktonIn situBiomass (ecology)OceanographySampling (signal processing)Temperate climateEnvironmental scienceLatitudeBiologyAtmospheric sciencesEcologyGeologyMeteorologyPhysics

Abstract

fetched live from OpenAlex

Abstract Plankton size spectra are important indicators of the ecosystem state, yet such measurements are typically biased by the available sampling methods. Here, we combined individual size measurement from two zooplankton imaging approaches—in situ observation by the Underwater Vision Profiler5 and Multinet-collection supplemented by ex situ imaging via Zooscan—obtained in the global ocean, to calculate zooplankton normalized biovolume size spectra (NBSS) for all organisms larger than 1 mm. The reconstructed NBSS combining both datasets resulted in increased biomass estimates by adding organisms poorly sampled by either of the methods. The optimal values measured by both methods are used to reconstruct the zooplankton biovolume and biomass distributions. The reconstructed slopes appeared steeper and closer to those measured only by the UVP5 (+7.6%) and flatter than those obtained only from the Multinet (−20%), particularly in tropical and temperate latitudes. The main difference in tropical and temperate NBSS from the two devices is due to the fragile rhizarians that were not accounted for when using net data. When possible, we suggest using in situ and ex situ technologies together, and we provide potential indications on how to correct for missing components of the community when only one method is available.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.395
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0060.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.054
GPT teacher head0.315
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2024
Admission routes1
Has abstractyes

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