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Record W4402720475 · doi:10.1101/2024.09.22.613703

Host transcriptional signatures associated with disease tolerance and environmental persistence in a mosquito-microsporidian system

2024· preprint· en· W4402720475 on OpenAlexaff
Luís M. Silva

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicInsect symbiosis and bacterial influences
Canadian institutionsUniversity of British Columbia
FundersUniversité de LausanneSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
KeywordsEvasion (ethics)Anopheles gambiaeHost (biology)Parasite hostingBiologyImmune systemSelection (genetic algorithm)Transmission (telecommunications)AnophelesEvolutionary biologyMalariaEcologyImmunologyComputer scienceArtificial intelligence

Abstract

fetched live from OpenAlex

Abstract Despite strong theory linking parasite life history to virulence and transmission, how parasite strategies affect host responses remains poorly understood. Here, experimental evolution and RNA sequencing were combined in the mosquito–microsporidian system Anopheles gambiae–Vavraia culicis to test whether parasite lineages selected for early or late transmission differ in the host responses they elicit. Early lineages were selected from hosts that died early in infection, whereas late lineages were selected from hosts that died later, generating parasite populations that differ in growth, virulence and environmental persistence. Mosquitoes were infected with evolved parasite lineages and sampled at a common sporulating stage. A reference infection response was defined relative to uninfected controls. Early - and late -selected parasites showed consistent, yet partly distinct, changes in host gene expression. Co-expression network analysis identified gene modules whose activity covaried with parasite traits, including virulence and environmental persistence. One module enriched for tissue maintenance and metabolic functions was negatively associated with virulence, consistent with reduced damage. Another module enriched for membrane and signalling functions was positively associated with environmental persistence, suggesting that host state at transmission may influence the environment in which transmission stages develop. Together, these results identify distinct host states linked to parasite life-history variation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.166
Teacher spread0.157 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2024
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicInsect symbiosis and bacterial influencesFrench-language works237,207