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Record W4402754964 · doi:10.1002/mds.30024

Confirmation of <scp>RAB32 Ser71Arg</scp> Involvement in Parkinson's Disease

2024· letter· en· W4402754964 on OpenAlexaboutno aff
Guillaume Cogan, Christelle Tesson, Christine Brefel‐Courbon, Aymeric Lanore, Gatepe Cedoine KODJOVI, Lisa Welment, Fabienne Clot, Suzanne Lesage, Alexis Brice

Bibliographic record

VenueMovement Disorders · 2024
Typeletter
Languageen
FieldMedicine
TopicParkinson's Disease Mechanisms and Treatments
Canadian institutionsnot available
FundersAssociation France ParkinsonFédération pour la Recherche sur le CerveauFondation de FranceFondation pour la Recherche MédicaleParkinson VerenigingAgence Nationale de la Recherche
KeywordsParkinson's diseaseMedicineNeuroscienceDiseasePsychologyPathology

Abstract

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More than a dozen genes are involved in monogenic forms of Parkinson's disease (PD).1 Their discovery have contributed to our understanding of the biology of PD and highlighted the role of α-synuclein, mitochondrial homeostasis, vesicle trafficking, endolysosomal system, and other pathways in PD.2 However, they explain only less than 10% of PD cases, suggesting that more genes are still to be identified. In an attempt to decipher the involvement of RAB proteins in PD, Gustavsson et al.3 have first identified that the RAB32 c.213C>G p.Ser71Arg variant cosegregates with the disease in three families and further reported an additional 13 unrelated heterozygous probands. The penetrance was incomplete. They show that RAB32 Arg71 does not affect the robust interaction between RAB32 and LRRK2 (a protein in which gain-of-function variants such as G2019S are well-known to contribute to PD), and that RAB32 Arg71 enhances LRRK2 kinase activation, reinforcing the pathogenicity likeliness. Another recent manuscript independently reported 18 new individuals with the RAB32 p.Ser71Arg in exome sequencing data of 2184 index familial PD cases (0.7%), whereas they observed a frequency of only 0.004% in control subjects, generating an odds ratio of 65.5.4 The phenotype was similar to typical PD, except for an earlier mean age at onset than usually reported (56 years old). No atypical sign was reported. Interestingly, both articles demonstrated that nearly all carriers (n = 31 and n = 34) shared a ~300-kb haplotype despite their disparate geographical origin (Tunisia, Canada, Italy, UK, etc.), suggesting a common ancestor. We attempted to replicate this finding in our own dataset described elsewhere.5 Among 1292 PD index cases who underwent whole-exome sequencing, we identified one patient with the RAB32 p.Ser71Arg. Both parents of the proband were French. PD was diagnosed in her father at 71 years old, and he died at the age of 86. We were not able to perform a segregation analysis (Fig. 1). Her paternal uncle died at 35 years old from a cirrhosis, and at last examination neither of her two sisters had neurological symptoms. She presented at age 67 with asymmetrical gait disturbances before rapidly developing akinesia, rigidity, and resting tremor. Hyposmia appeared in the 2 years after the diagnosis. By age 70, her International Parkinson and Movement Disorder Society–sponsored revision of the Unified Parkinson's Disease Rating Scale Part III on score was 27, and her Hoehn and Yahr stage was at 3. She had no cognitive impairment, no oculomotor abnormalities, no sleep disorder, and no hallucination but developed urinary disturbances and postural instability with short and shuffling steps and falls. Cerebral magnetic resonance imaging was normal, and she was treated with levodopa (l-dopa) at 400 mg/day with a moderate response subjectively assessed by the neurologist and her at 30% to 40%. She developed dyskinesias 4 years after the disease onset following an increase of l-dopa. Dyskinesias remained present at last examination at age 74, when l-dopa levels were at 550 mg/day. Haplotype analysis performed by Single Nucleotide Polymorphism (SNP) array with additional imputation indicated that she shared the common 300-kb haplotype (Supporting Information Data S1 and Table S1). We confirm the widespread distribution of the RAB32 p.Ser71Arg now detected in France. The frequency of the pathogenic variant in European individuals from our cohort of PD index cases is 0.1%. However, it represents 0.7% of European cases with a family history compatible with autosomal dominant inheritance. This finding is in the range of previously reported cohorts of index cases from PD families, ranging from 0.7%4 to 2.3%.3 Similar to patients reported to date, the phenotype is that of typical PD. However, the l-dopa response was not as good as previously reported. Thus, because RAB32 p.Ser71Arg appears to be not clinically recognizable, its inclusion in the diagnostic strategy of clinical laboratories seems necessary for its identification and ultimately for providing genetic counseling to patients with PD. This study was supported by the Fondation pour la Recherche Médicale (MND202004011718), the Fondation de France, la Fédération pour la Recherche sur le Cerveau, France-Parkinson Association, and the French program “Investissements d'avenir” (ANR-10-IAIHU-06). (1) Research project: A. Conception, B. Organization, C. Execution; (2) Statistical Analysis: A. Design, B. Execution, C. Review and Critique; (3) Manuscript: A. Writing of the First Draft, B. Review and Critique. G.C.: 1C, 2A, 2B, 2C, 3A, 3B. C.T.: 1A, 1B, 1C, 2A, 2B, 3B. C.B-C.: 1C, 2C, 3B. A.L.: 2B, 2C, 3B. G.C.K..: 2B, 2C, 3B. L.W.: 1C, 2B. F.C.: 1C, 2B, 3B. S.L.: 1A, 1B, 1C, 2A, 2B, 2C, 3B. A.B: 1A, 1B, 1C, 2A, 2B, 2C, 3B. G.C. is supported by the Global Parkinson's Genetics Program (GP2). GP2 is funded by the Aligning Science Across Parkinson's (ASAP) initiative and implemented by The Michael J. Fox Foundation for Parkinson's Research (https://gp2.org). For a complete list of GP2 members see https://gp2.org. S.L. has received grants from Fondation de la Recherche Médicale (FRM, MND202004011718). The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to privacy or ethical restrictions. Data S1. Table S1. Genotype comparison of the present case with those reported by Hop et al. and Gustavsson et al. Numbers in parenthesis represent the alternative genotype in Hop et al. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.093
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.248
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations5
Published2024
Admission routes1
Has abstractyes

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