MétaCan
Menu
Back to cohort
Record W4402764036 · doi:10.2196/preprints.57926

Extracting Critical Information from Unstructured Clinicians’ Notes Data to Identify Dementia Severity Using a Rule-Based Approach: Feasibility Study (Preprint)

2024· preprint· en· W4402764036 on OpenAlexaboutno aff
Ravi Prakash, Matthew E. Dupre, Truls Østbye, Hanzhang Xu

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldComputer Science
TopicMachine Learning in Healthcare
Canadian institutionsnot available
Fundersnot available
KeywordsPreprintDementiaData scienceComputer sciencePsychologyMedicineData miningWorld Wide WebInternal medicineDisease

Abstract

fetched live from OpenAlex

<sec> <title>BACKGROUND</title> The severity of Alzheimer disease and related dementias (ADRD) is rarely documented in structured data fields in electronic health records (EHRs). Although this information is important for clinical monitoring and decision-making, it is often undocumented or “hidden” in unstructured text fields and not readily available for clinicians to act upon. </sec> <sec> <title>OBJECTIVE</title> We aimed to assess the feasibility and potential bias in using keywords and rule-based matching for obtaining information about the severity of ADRD from EHR data. </sec> <sec> <title>METHODS</title> We used EHR data from a large academic health care system that included patients with a primary discharge diagnosis of ADRD based on &lt;i&gt;ICD-9&lt;/i&gt; (&lt;i&gt;International Classification of Diseases, Ninth Revision&lt;/i&gt;) and &lt;i&gt;ICD-10&lt;/i&gt; (&lt;i&gt;International Statistical Classification of Diseases, Tenth Revision&lt;/i&gt;) codes between 2014 and 2019. We first assessed the presence of ADRD severity information and then the severity of ADRD in the EHR. Clinicians’ notes were used to determine the severity of ADRD based on two criteria: (1) scores from the Mini Mental State Examination and Montreal Cognitive Assessment and (2) explicit terms for ADRD severity (eg, “mild dementia” and “advanced Alzheimer disease”). We compiled a list of common ADRD symptoms, cognitive test names, and disease severity terms, refining it iteratively based on previous literature and clinical expertise. Subsequently, we used rule-based matching in Python using standard open-source data analysis libraries to identify the context in which specific words or phrases were mentioned. We estimated the prevalence of documented ADRD severity and assessed the performance of our rule-based algorithm. </sec> <sec> <title>RESULTS</title> We included 9115 eligible patients with over 65,000 notes from the providers. Overall, 22.93% (2090/9115) of patients were documented with mild ADRD, 20.87% (1902/9115) were documented with moderate or severe ADRD, and 56.20% (5123/9115) did not have any documentation of the severity of their ADRD. For the task of determining the presence of any ADRD severity information, our algorithm achieved an accuracy of &amp;gt;95%, specificity of &amp;gt;95%, sensitivity of &amp;gt;90%, and an &lt;i&gt;F&lt;/i&gt;&lt;sub&gt;1&lt;/sub&gt;-score of &amp;gt;83%. For the specific task of identifying the actual severity of ADRD, the algorithm performed well with an accuracy of &amp;gt;91%, specificity of &amp;gt;80%, sensitivity of &amp;gt;88%, and &lt;i&gt;F&lt;/i&gt;&lt;sub&gt;1&lt;/sub&gt;-score of &amp;gt;92%. Comparing patients with mild ADRD to those with more advanced ADRD, the latter group tended to contain older, more likely female, and Black patients, and having received their diagnoses in primary care or in-hospital settings. Relative to patients with undocumented ADRD severity, those with documented ADRD severity had a similar distribution in terms of sex, race, and rural or urban residence. </sec> <sec> <title>CONCLUSIONS</title> Our study demonstrates the feasibility of using a rule-based matching algorithm to identify ADRD severity from unstructured EHR report data. However, it is essential to acknowledge potential biases arising from differences in documentation practices across various health care systems. </sec>

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.007
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Scholarly communication, Open science, Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.674
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0050.007
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0030.001
Open science0.0050.022
Research integrity0.0010.004
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.228
GPT teacher head0.466
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

Explore more

Same topicMachine Learning in HealthcareFrench-language works237,207