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Record W4403537762 · doi:10.1016/j.esmoop.2024.103926

164TiP MONSTAR-GLYCO: A multi-institutional prospective study harnessing glycomics and multi-omics on the j-glyconet and SCRUM-MONSTR platform

2024· article· en· W4403537762 on OpenAlexfundno aff
Takuya Hashimoto, Taro Shibuki, Mitsuho Imai-Sumida, Takao Fujisawa, Yoshiaki Nakamura, Hidenori Bando, Riu Yamashita, Akitaka Makiyama, Yasuhiko Kizuka, Nobuhisa Matsuhashi, Takayuki Yoshino

Bibliographic record

VenueESMO Open · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGlycosylation and Glycoproteins Research
Canadian institutionsnot available
FundersCanadian Glycomics NetworkMinistry of Education, Culture, Sports, Science and Technology
KeywordsScrumGlycomicsOmicsComputer scienceComputational biologyBiologyBioinformaticsSoftwareOperating systemSoftware developmentGlycanMolecular biology

Abstract

fetched live from OpenAlex

by RECIST v1.1.Key secondary endpoints include DCR, PFS, toxicity, and incidence of SMO/PTCH1 mutations as a proportion of total patients screened.Part A: eligible patients will undergo biomarker screening for aberrant Hh pathway expression.Whole exome sequencing will be performed on archival tumour tissue and a contemporary blood sample (for ctDNA + patients).Part B: biomarker-positive patients via Part A or a prior commercially available NGS panel will receive sonidegib at 200mg daily with potential dose-escalation until disease progression by RECIST v1.1 or unacceptable toxicity.Enrolment has commenced at Royal North Shore Hospital, Sydney.Sixteen patients have enrolled in Part A and 1 (of 35 planned) has enrolled in Part B.Clinical trial identification: ANZCTR: ACTRN12623001216606; Registered 27/11/2023.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.032

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.002
Science and technology studies0.0020.001
Scholarly communication0.0020.001
Open science0.0010.004
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0100.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.054
GPT teacher head0.339
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractno

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