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Record W4403576527 · doi:10.1101/2024.10.18.619094

deadtrees.earth - An Open-Access and Interactive Database for Centimeter-Scale Aerial Imagery to Uncover Global Tree Mortality Dynamics

2024· preprint· en· W4403576527 on OpenAlexaff
Clemens Mosig, Janusch Vajna-Jehle, Miguel D. Mahecha, Yan Cheng, Henrik Hartmann, David Montero, Samuli Junttila, Stéphanie Horion, Stephen Adu‐Bredu, Djamil Al‐Halbouni, Matthew J. Allen, Jan Altman, Claudia Angiolini, Rasmus Astrup, Caterina Barrasso, Harm Bartholomeus, Benjamin Brede, Allan Buras, Erik Carrieri, Gherardo Chirici, Myriam Cloutier, K. C. Cushman, James W. Dalling, Jan Dempewolf, Martin Denter, Simon Ecke, Jana Eichel, Anette Eltner, Fabian Ewald Fassnacht, Matheus Pinheiro Feirreira, Julian Frey, Annett Frick, Selina Ganz, Matteo Garbarino, Matthias Gassilloud, Marziye Ghasemi, Francesca Giannetti, Carl R. Gosper, Konrad Greinwald, Stuart Grieve, Jesús Aguirre‐Gutiérrez, Anna Göritz, Peter Hajek, David William Hedding, M. Benavides Hernández, Marco Heurich, Eija Honkavaara, Tommaso Jucker, Jesse M. Kalwij, Pratima Khatri‐Chhetri, Hans-Joachim Klemmt, Niko Koivumäki, Kirill Korznikov, Stefan Kruse, Robert Krüger, Étienne Laliberté, Liam Langan, Hooman Latifi, Jan Lehmann, Linyuan Li, Emily Lines, Javier Lopatin, Arko Lucieer, Marvin Ludwig, Antonia Ludwig, Päivi Lyytikäinen‐Saarenmaa, Qin Ma, Giovanni Marino, Michael Maroschek, Fabio Meloni, Annette Menzel, Hanna Meyer, Mojdeh Miraki, Daniel Moreno‐Fernández, Helene C. Muller‐Landau, Mirko Mälicke, Jakobus Möhring, Jana Müllerová, Paul Neumeier, Roope Näsi, Lars Oppgenoorth, M. A. Palmer, Thomas Paul, Alastair Potts, Suzanne M. Prober, Stefano Puliti, Óscar Pérez‐Priego, Chris Reudenbach, Christian Rossi, Nadine K. Ruehr, Paloma Ruiz‐Benito, Christian Mestre‐Runge, Michael Scherer-Lorenzen, Felix Schiefer, Jacob Schladebach, Marie‐Therese Schmehl, Selina Schwarz, Mirela Beloiu, Rupert Seidl, Elham Shafeian, Leopoldo de Simone, Hormoz Sohrabi, Laura Sotomayor, Ben Sparrow, Benjamin S.C. Steer, Matt Stenson, Benjamin Stöckigt, Yanjun Su, Juha Suomalainen, Michele Torresani, Josefine Umlauft, Nicolás Vargas-Ramírez, Michele Volpi, Vicente Vásquez, Ben Weinstein, Tagle Casapia Ximena, Katherine Zdunic, Katarzyna Zielewska-Büttner, Raquel Alves de Oliveira, Liz van Wagtendonk, Vincent von Dosky, Teja Kattenborn

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldEnvironmental Science
TopicRemote Sensing and LiDAR Applications
Canadian institutionsUniversity of SaskatchewanUniversité de MontréalArtificial Intelligence in Medicine (Canada)
Fundersnot available
KeywordsComputer scienceScale (ratio)Tree (set theory)Aerial imageryDynamics (music)CentimeterDatabaseRemote sensingGeographyArtificial intelligenceCartographyAstronomyMathematicsPhysics

Abstract

fetched live from OpenAlex

Abstract Excessive tree mortality is a global concern and remains poorly understood as it is a complex phenomenon. We lack global and temporally continuous coverage on tree mortality data. Ground-based observations on tree mortality, e.g ., derived from national inventories, are very sparse, not standardized and not spatially explicit. Earth observation data, combined with supervised machine learning, offer a promising approach to map tree mortality over time. However, global-scale machine learning requires broad training data covering a wide range of environmental settings and forest types. Drones provide a cost-effective source of training data by capturing high-resolution orthophotos of tree mortality events at sub-centimeter resolution. Here, we introduce deadtrees.earth, an open-access platform hosting more than a thousand centimeter-resolution orthophotos, covering already more than 300,000 ha, of which more than 58,000 ha are fully annotated. This community-sourced and rigorously curated dataset shall serve as a foundation for a global initiative to gather comprehensive reference data. In concert with Earth observation data and machine learning it will serve to uncover tree mortality patterns from local to global scales. This will provide the foundation to attribute tree mortality patterns to environmental changes or project tree mortality dynamics to the future. Thus, the open and interactive nature of deadtrees.earth together with the collective effort of the community is meant to continuously increase our capacity to uncover and understand tree mortality patterns.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesOpen science
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: none
Teacher disagreement score0.997
Threshold uncertainty score0.078

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0040.002
Science and technology studies0.0000.000
Scholarly communication0.0020.002
Open science0.0030.004
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0230.019

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.304
Teacher spread0.281 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2024
Admission routes1
Has abstractyes

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