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Record W4403595578 · doi:10.1101/2024.10.17.618972

A generalist microbial predator shows innate attraction to more profitable prey, but does not learn from experience

2024· preprint· en· W4403595578 on OpenAlexaff
P. M. Shreenidhi, Rachel I. McCabe

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtist diversity and phylogeny
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsDictyostelium discoideumGeneralist and specialist speciesAttractionPredationPredatorBiologyEcologyHabitatGeneGenetics

Abstract

fetched live from OpenAlex

Abstract How do generalists adjust to variation in prey abundance and profitability and seek out their preferred prey? We investigated this question in the soil protist Dictyostelium discoideum , a generalist predator of many species of bacteria. Despite their generalist diet, amoebas proliferate more quickly on some bacteria than on others. We tested amoeba chemoattraction towards 23 bacterial species and found that they are generally more attracted to the more profitable prey bacteria. Naïve amoebas were also preferentially more attracted to an edible mutant rather than the inedible wild type of a soil Pseudomonas isolate. These results suggest that D. discoideum amoebas have an innate prey preference that is adaptive. We also tested how experience with different prey bacteria affects chemoattraction in amoebas. Given the huge number of bacterial species in soil, learning from experience should be advantageous. However, we found no evidence that experience with prey bacteria affects preference. Our results suggest that generalist amoebas are innately attracted to the more profitable prey bacteria and this innate attraction cannot be overridden by recent experience.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.232
Teacher spread0.217 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

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