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S224 Evaluating the Risk of Non-Colorectal Cancers in Individuals With a False Positive Blood-Based Colorectal Cancer Screening Test

2024· article· en· W4403719147 on OpenAlexaff
Daniel C. Chung, Darrell M. Gray, Harminder Singh, Rachel B. Issaka, Victoria M. Raymond, Craig Eagle, Sylvia Hu, Darya Chudova, AmirAli Talasaz, Joel K. Greenson, Frank A. Sinicrope, Samir Gupta, William M. Grady

Bibliographic record

VenueThe American Journal of Gastroenterology · 2024
Typearticle
Languageen
FieldMedicine
TopicColorectal Cancer Screening and Detection
Canadian institutionsUniversity of Manitoba
Fundersnot available
KeywordsMedicineColorectal cancerInternal medicineOncologyCancerColorectal cancer screeningTest (biology)GastroenterologyColonoscopy

Abstract

fetched live from OpenAlex

Introduction: Blood-based colorectal cancer screening tests provide a non-invasive colorectal cancer (CRC) screening modality that can be completed at any healthcare encounter. Data have shown that incorporating blood-based testing as a CRC screening option improves overall screening rates. With the introduction of these new tests, it is important to understand the implications of “false positive” result and if additional follow-up, beyond colonoscopy, is necessary to evaluate for non-colorectal cancer malignancies. To address this outstanding question, we report on the 1-year clinical outcomes of individuals enrolled and tested with Shield in the ECLIPSE study. Methods: ECLIPSE is a prospective, observational, multi-center study to evaluate a cfDNA blood-based CRC screening test (Shield) in average risk individuals, age 45-84. Enrolled individuals provided a blood sample prior to colonoscopy, followed by standard of care colonoscopy. Sensitivity and specificity of the blood-based test were determined as compared to the reference colonoscopy. Individuals were followed at 1- and 2-years post study enrollment date to evaluate for interval malignancies, both CRC and non-CRC. Results: ECLIPSE enrolled 22,877 average risk individuals. The final evaluable cohort was 7,861 persons. We previously reported that the study met its co-primary objectives; CRC sensitivity was 83% (95%CI 72 – 90%) and AN specificity was 90% (95%CI 89-90%). Test positivity rate was 11.4%. 698 individuals had a “false positive” cfDNA blood-based test (positive blood-based test and no colonoscopy finding of CRC or advanced precancerous lesion). 640/698 (92%) had 1 year of clinical follow-up and 0.8% (5/640) of them had a diagnosis of a non-colorectal cancer (95%CI 0.3 – 1.8) at 1 year of follow-up. In the 5,982 individuals with a “true negative” Shield result (negative cfDNA blood based test and colonoscopy that was negative for CRC or advanced precancerous lesion), 92% (5,502) had 1 year of clinical follow-up. 0.9% (51/5,502) had a non-colorectal cancer (95%CI 0.7-1.2) within 1 year of enrollment. There were no diagnoses of post-colonoscopy colorectal cancer identified during the 1-year follow-up period. Conclusion: Data from ECLIPSE demonstrate that the rate of non-colorectal malignancies does not differ in those who tested positive with the cfDNA blood-based test as compared to those who tested negative. Clinical follow-up is ongoing and will continue to gather 1- and 2-year cancer diagnosis in enrolled individuals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.010
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.018

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.010
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.301
Teacher spread0.290 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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