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S841 Training Machine Learning Models for the Assessment of the Endoscopic Mayo Score in Ulcerative Colitis: A Systematic Review

2024· review· en· W4403725663 on OpenAlexaff
David T. Rubin, Walter Reinisch, Neeraj Narula, Daniel Colucci, William Eastman, Klaus Gottlieb, Ana P. Lacerda, Stephen Laroux, Irene Modesto, Emma Navajas, Charles Owen, Yeli Wang, Shrujal S. Baxi

Bibliographic record

VenueThe American Journal of Gastroenterology · 2024
Typereview
Languageen
FieldMedicine
TopicDiverticular Disease and Complications
Canadian institutionsMcMaster University
Fundersnot available
KeywordsMedicineUlcerative colitisInternal medicineDisease

Abstract

fetched live from OpenAlex

Introduction: The endoscopic Mayo Score (eMS) is utilized to provide an objective assessment of therapeutic endpoints in Ulcerative Colitis (UC) clinical trials, however inter- and intra-observer variability in assignment of eMS grades remains a challenge, even for trained central readers. Advancements in machine learning (ML) technology offer a potential solution to improve the consistency of endoscopic scoring. Methods employed in the development of these models may impact their accuracy in trials. The objective of this study is to provide a systematic review on training of ML models to generate an automated eMS grade on a full-length endoscopic procedure recording from patients with UC. Methods: Our review includes full-length manuscripts on ML video-level eMS prediction models from human studies in UC published in English. PubMed/MEDLINE, EMBASE, and Web of Science were systematically searched on December 31, 2023, and supplemented by reference checks and Google search. Three rounds of title screening were conducted. Information on ML models and training data were extracted independently by 2 authors, with disparities resolved through discussion. Results: Seven studies met criteria for inclusion. Five studies utilized endoscopic video recordings as the source data for model development (dataset size ranged from 134-1,881 videos), and 2 utilized still images captured from previous endoscopic procedures (both with a dataset size of 16,514 images). The final output of the model is an ordinal eMS grade (0, 1, 2, 3) in 6 studies, while one study generated a binary eMS grade in 3 ways (eMS >=1, eMS >=2, eMS >=3). Model architectures generally consisted of a few key components that contributed to the final video level output, including an informative image ML classifier (n=6), a still image eMS ML classifier (n=6), and video level eMS aggregation through statistical (n=5) or ML (n=2) techniques. Data labeling strategies to train still image and video level ML eMS classifiers varied across studies in the type of endoscopic data labeled, reading paradigm, and personnel. Conclusion: Several studies have trained ML models to assess the eMS in UC endoscopic videos. Training plays an important role in model generalizability, and variation in methodology may inform model performance. Awareness from clinicians, regulators, investigators, and industry on how these models are built will make them more adept in selecting the most appropriate models for future studies (see Figure 1, Table 1).Figure 1.: Overview of eMS labels applied to endoscopic data for model training. Labels are provided through a human annotation workflow with various paradigms described below. (A) eMS labels for training of image classification ML models (applied in 6 studies). (B) eMS labels for training of video classification ML models (applied in 2 studies). Studies in italics indicate the use of weak labels where a higher-level label is automatically assigned at a more granular level, such as automatically assigning an image a label based on the label at the video level. Table 1. - Description of training datasets and ML model characteristics for automated video-level eMS assessments in UC Study name and year Source of data Type of source endoscopic data Quantity of data Number of patients Final video-level output Summary of architecture Method for video-level aggregation Stidham et al, 2019 Routine care Images 16,514 images 3,082 Ordinal eMS grade (0, 1, 2, 3) 1. Still-image eMS classifier,2. Video-level eMS aggregation Proportion of frame eMS grades Becker et al, 2021 Clinical trial Videos 1,672 videos 1,105 Binary eMS grade, 3 ways: eMS >=1, eMS >=2, eMS >=3 1. Informative image classifier,2. Still-image eMS classifier,3. Video-level eMS aggregation Average of frame eMS grades Gottlieb et al, 2021 Clinical trial Videos 795 videos 249 Ordinal eMS grade (0, 1, 2, 3) 1. Informative image classifier,2. Still-image feature extractor,3. Video-level eMS aggregation RNN Schwab et al, 2021 Clinical trial Videos 1,881 videos 726 Ordinal eMS grade (0, 1, 2, 3) 1. Informative image classifier,2. Still-image eMS classifier,3. Video-level eMS aggregation Frame with the maximum eMS grade Yao et al, 2021 Routine care Images 16,514 images 3,082 Ordinal eMS grade (0, 1, 2, 3) 1. Informative image classifier,2. Still-image eMS classifier,3. Video-level eMS aggregation Proportion of frame eMS grades Byrne et al, 2023 Routine care Videos 134 videos Not specified Ordinal eMS grade (0, 1, 2, 3) 1. Informative image classifier,2. Still-image eMS classifier,3. Clip-level eMS assignment,4. Video-level eMS aggregation Clip with the maximum eMS grade (clip-level aggregation done via proportion of frame eMS grades) Rubin et al, 2023 Clinical trial Videos 793 videos 294 Ordinal eMS grade (0, 1, 2, 3) 1. Informative image classifier,2. Still-image feature and eMS classifier,3. Clip-level eMS assignment,4. Video-level eMS aggregation RNN (clip-level aggregation done via RNN) RNN, recurrent neural network.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Systematic review · Consensus signal: Systematic review
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.048
Threshold uncertainty score0.401

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0030.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.078
GPT teacher head0.370
Teacher spread0.292 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSystematic review
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Published2024
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