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Record W4403781831 · doi:10.1002/epd2.20293

The curious case of the gene, the lesion, or neither

2024· article· en· W4403781831 on OpenAlexaff
Alexander Freibauer, Bashayer Almohaimeed, Anita Datta

Bibliographic record

VenueEpileptic Disorders · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA regulation and disease
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsLesionMedicineNeurosciencePsychologyPathology

Abstract

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With increased availability of genetic testing, more patients have been identified as having causative variants. With a greater amount of diagnostic certainty, there is uncertainty in its consideration in epilepsy surgery workup. We report a case of a boy with a GRIN2B likely pathogenic variant, with medically refractory epilepsy who underwent epilepsy surgery evaluation, resulting in successful surgical resection with good outcome. Our patient is a 15-year-old right-handed man, with seizure onset at three years of age. In the first six years of life, he had generalized tonic–clonic and myoclonic seizures that subsequently resolved. Since age seven, he has had medically refractory seizures characterized by a nonspecific aura, followed by repetition of a stereotyped phrase progressing to oral automatisms, right-sided head version, followed by right arm flexion and right-hand posturing. He was medically refractory on appropriate doses of lacosamide and lamotrigine and had previously failed nine other anti-seizure medications. His past medical history is significant for depression, mild intellectual disability, attention difficulties, and behavioral dysregulation. His birth history was unremarkable. Family history was unremarkable. Initial EEG showed slowing and interictal discharges over the left temporal region. During EEG, a typical seizure was captured, with EEG onset of rhythmic delta over the left temporal chain (Figure 1A). MRI brain showed a lesion in the right occipitotemporal cortex, consistent with a multi nodular and vacuolating neuronal tumor (MVNT) (Figure 1B). A PET scan showed hypometabolism at the left temporal pole and medial temporal cortex. Subtraction SPECT showed increased perfusion to the left temporal pole. Whole exome sequencing identified a de novo heterozygous likely pathogenic GRIN2B variant (p. Cys946Ter). Although the epileptogenic zone seemingly localized to the left temporal region, the epileptogenic lesion was incongruent. Intracranial electroencephalography through stereotactic electrodes was performed to clarify this inconsistency. Although the patient's genetic variant likely explained his intellectual disability and seizures, as his seizures remained stereotyped and focal, he was still considered a possible surgical candidate. Stereotactic electrodes were implanted with seven electrodes sampling the left hemisphere, and two electrodes in the right hemisphere, as demonstrated in Figure 2. Interictal activity was most prominent from the left temporal inferior gyrus and hippocampus. Six clinical seizures were captured, all with onset from the left hippocampus. Following explantation, clinical consensus was that the epileptogenic zone involved the left hippocampus, and a left temporal lobectomy was performed, guided by electrocorticography. Surgical pathology showed no evidence of a definitive primary epileptogenic process. Following surgery, the patient was seizure-free at 11 months post surgery (Engel 1A), with improved ability to perform activities of daily living and memory. GRIN2B encodes for the NMDA receptor subtype 2B, a class of ionotropic glutamate receptors involved in numerous cellular functions.2 Patients with GRIN2B pathogenic variants express the phenotype of GRIN2B-related neurodevelopmental disorder. This is an autosomal dominant disorder characterized by mild-to-profound developmental delay/intellectual disability, muscle tone abnormalities, epilepsy, and autism spectrum disorder.3 Epilepsy occurs in 51% of individuals, with onset from birth to 9 years of age, with 50% being medically refractory.3 Seizures may be generalized or focal. Imaging shows a malformation of cortical development including polymicrogyria, irregular gyral pattern, and hypoplastic corpus callosum in a minority of individuals.4 No previous patients with GRIN2B have been reported to have MVNT or underwent epilepsy surgery to treat their epilepsy.3 Increased use of genetic testing has provided greater diagnostic certainty for patients with epilepsy. The hope in the future will be to leverage diagnostic knowledge to improve patient management, but this is not possible now. This case shows that even with a genetic diagnosis, epilepsy surgery remains the best treatment option for focal epilepsies. This case also demonstrates best practices in epilepsy surgery workup. A common assumption made during surgical workup is that an epileptogenic lesion is analogous to the epileptogenic zone. For our case, even though the patient had a suspected lesion known to be epileptogenic, it is incongruence with EEG studies suggested that it was not representative of the epileptogenic zone. As a result, invasive studies with stereoEEG were able to confirm this hypothesis. In conclusion, a genetic diagnosis does not exclude a patient from being a candidate for epilepsy surgery, and an epileptogenic lesion is not always the source of a patient's seizures. We would like to thank Dr. Bruce Bjornson and Daniel Kim for their assistance in creating the 3-D model to demonstrate electrode positioning in Figure 2. None of the authors have any conflict of interest to disclose. Data S1.. Data S2.. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article. Answers may be found in the supporting information.

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.541
Threshold uncertainty score0.163

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.266
Teacher spread0.257 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2024
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