MétaCan
Menu
Back to cohort
Record W4404002069 · doi:10.1101/2024.10.31.24314716

Loss of DOT1L disrupts neuronal transcription, behavior, and leads to a neurodevelopmental disorder

2024· preprint· en· W4404002069 on OpenAlexaff
Marissa J. Maroni, M. Kathryn Barton, Katherine A. Lynch, Ashish R. Deshwar, Philip D. Campbell, Rachel Lee, Annastelle Cohen, Alekh Paranjapye, Víctor Faùndes, Gabriela M. Repetto, Caoimhe McKenna, Amelle L. Shillington, Chanika Phornphutkul, Grazia M.S. Mancini, Rachel Schot, Tahsin Stefan Barakat, Christopher M. Richmond, Julie Lauzon, Ahmed Aly Ibrahim, Daniel Natera‐de Benito, C. Ortez, Berta Estévez‐Arias, François Lecoquierre, Kévin Cassinari, Anne-Marie Guerrot, Jonathan Lévy, Xénia Latypova, Alain Verloes, A. Micheil Innes, Xiao‐Ru Yang, Siddharth Banka, Katharina Vill, Maureen Jacob, Michael C. Kruer, Peter T. Skidmore, Carolina I. Galaz-Montoya, Somayeh Bakhtiari, Jessica L. Mester, Michael Granato, Karim‐Jean Armache, Gregory Costain, Erica Korb

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics and Neurodevelopmental Disorders
Canadian institutionsMcMaster Children's HospitalAlberta Children's HospitalUniversity of TorontoSickKids FoundationUniversity of British ColumbiaHospital for Sick Children
Fundersnot available
KeywordsNeuroscienceNeurodevelopmental disorderTranscription factorLoss functionFunction (biology)Animal behaviorAutism spectrum disorderPsychologyBiologyDevelopmental psychologyPhenotypeGeneticsAutismGene

Abstract

fetched live from OpenAlex

Abstract Individuals with monoallelic gain-of-function variants in the histone lysine methyltransferase DOT1L display global developmental delay and varying congenital anomalies. However, the impact of monoallelic loss of DOT1L remains unclear. Here, we sought to define the effects of partial DOT1L loss by applying bulk and single-nucleus RNA-sequencing, ChIP-sequencing, imaging, multielectrode array recordings, and behavioral analysis of zebrafish and multiple mouse models. We present a cohort of 16 individuals (12 females, 4 males) with neurodevelopmental disorders and monoallelic DOT1L variants, including a frameshift deletion, an in-frame deletion, a nonsense, and missense variants clustered in the catalytic domain. We demonstrate that specific variants cause loss of methyltransferase activity. In primary cortical neurons, Dot1l knockdown disrupts transcription of synaptic genes, neuron branching, expression of a synaptic protein, and neuronal activity. Further in the cortex of heterozygous Dot1l mice, Dot1l loss causes sex-specific transcriptional responses and H3K79me2 depletion, including within down-regulated genes. Lastly using both zebrafish and mouse models, we found behavioral disruptions that include developmental deficits and sex-specific social behavioral changes. Overall, we define how DOT1L loss leads to neurological dysfunction by demonstrating that partial Dot1l loss impacts neuronal transcription, neuron morphology, and behavior across multiple models and systems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.253
Teacher spread0.241 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2024
Admission routes1
Has abstractyes

Explore more

Same venuemedRxivSame topicGenetics and Neurodevelopmental DisordersFrench-language works237,207