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The Transcription Factor ELF4 Restrains the Inflammatory Potential of CD4+ T Cells

2024· article· en· W4404167282 on OpenAlexaff
Mackenzie Bender, Sam J. Olyha, Molly L. Bucklin, Sindhura Siddapureddy, John Attanasio, Jie Pan, Aleixo M. Muise, C. Lucas

Bibliographic record

VenueThe Journal of Immunology · 2024
Typearticle
Languageen
FieldImmunology and Microbiology
TopicIL-33, ST2, and ILC Pathways
Canadian institutionsUniversity of Toronto
Fundersnot available
KeywordsTranscription factorCell biologyInflammationBiologyCancer researchComputational biologyGeneticsImmunologyGene

Abstract

fetched live from OpenAlex

Abstract ELF4 is a member of the ETS family of transcription factors, known to be involved in the regulation and development of immune cells. Yet, the primary function of ELF4 was unknown prior to our discovery of patients with loss-of-function mutations in ELF4 that cause the monogenic autoinflammatory disease Deficiency in ELF4, X-linked (DEX), driven by aberrant inflammation. While it has been demonstrated by our lab that global loss of ELF4 results in hyper-cytokine release in macrophages and restrains Th17 differentiation in mice, the breadth and mechanisms of CD4+ T cell regulation by ELF4 remain enigmatic. Here, we show that loss of T cell-intrinsic ELF4 leads to enhanced interferon gamma and IL-17A production upon activation of naïve CD4+ T cells and demonstrate modulation of CD4+ T cell cytokine production by ELF4 is independent of its presence during T cell development as well as extrinsic signaling in vivo. Further, absence of T cell-intrinsic ELF4 leads to decreased expression of ATF4, a master regulator of the integrated stress response demonstrated to be crucial in restraining cytokine release upon initial activation of naïve T cells. Notably, we found ELF4 binds to the promoter region of ATF4, and expression of ATF4-induced genes is significantly reduced in CD4+ T cells in the absence of ELF4 post-activation. Thus, we elucidate an essential mechanism for restraining CD4+ T cell inflammatory potential dependent on regulation of the integrated stress response by ELF4.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.393
Threshold uncertainty score0.479

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.212
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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