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Record W4404255868 · doi:10.1128/mra.00798-24

Metagenomic sequencing of cyanobacterial-dominated Lake Victoria—an African Great Lake

2024· article· en· W4404255868 on OpenAlexaff
Brittany N. Zepernick, Lauren Hart, Kaela E. Natwora, Katelyn M. Brown, Julia Akinyi Obuya, Mark Olokotum, Eric O. Okech, Natalie G. Keating, Davide Lomeo, Emma J. Tebbs, Cody S. Sheik, David H. Sherman, Gregory J. Dick, Steven W. Wilhelm, Ken G. Drouillard, Ted Lawrence, Albert Getabu, Bethwell Owuor, Anakalo Shitandi, Reuben Omondi, James Njiru, Lewis Sitoki, Kefa M. Otiso, R. Michael L. McKay, George S. Bullerjahn, Dorine Achieng, Tonny Achieng, James Achiya, Anjan Adhikari, Katelyn B. Barker, Malcolm A. Barnard, George M. Basweti, Maxwell R.W. Beal, Aidan Byrne, Mercy Chepkirui, William R. Cody, Nusrat Nasrin Khan, Linet Imbayi Kiteresi, Jared Babu Miruka, Samantha Mohney, Martha Moseti, Pamela Okutoyi, Dennis Otieno, Omondi A. Owino, Winnie Owoko, Lisa Radock, Jordyn Stoll, Mariam N. Swaleh, Ryan S. Wagner, Emily Varga

Bibliographic record

VenueMicrobiology Resource Announcements · 2024
Typearticle
Languageen
FieldEnvironmental Science
TopicAquatic Ecosystems and Biodiversity
Canadian institutionsUniversity of Windsor
FundersNational Institute of Environmental Health SciencesNational Institutes of HealthBowling Green State UniversityNational Science Foundation
KeywordsMetagenomicsCyanobacteriaGeographyEcologyGeologyBiologyPaleontologyBacteriaGeneticsGene

Abstract

fetched live from OpenAlex

We report 40 metagenomic libraries collected from the Winam Gulf of Lake Victoria during May-July of 2022-2023 and an additional eight opportunistic libraries from adjacent Lakes Simbi, Naivasha, and regional river systems. The sampling period captured cyanobacterial bloom events - shedding insight onto community composition and genomic potential.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.989
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.212
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; both teacher heads agree on what is shown here.

Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2024
Admission routes1
Has abstractyes

Explore more

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