MétaCan
Menu
Back to cohort
Record W4404553340 · doi:10.33137/utjph.v5i1.44130

Centrality in Collaboration: Community Detection for Oncology Researchers

2024· article· en· W4404553340 on OpenAlex
Benjamin Smith, Tyler Pittman, Wei Xu

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueUniversity of Toronto Journal of Public Health · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBioinformatics and Genomic Networks
Canadian institutionsPrincess Margaret Cancer CentreUniversity Health NetworkPublic Health OntarioUniversity of Toronto
Fundersnot available
KeywordsBetweenness centralityCentralityReferralClinical trialPsychological interventionMedicineComputer sciencePsychologyArtificial intelligenceStatisticsFamily medicineMathematicsNursingInternal medicine

Abstract

fetched live from OpenAlex

Background: Cancer patients who do not respond to standard treatments often become candidates for clinical trials. It is known that the collaboration networks between oncologists is a primary factor for further engagement in subsequent trial enrollment. Social network analysis (SNA) and community detection algorithms can be used to explore collaboration patterns using data from the Princess Margaret Clinical Research Record and Cancer Registry. Objectives: The data consists of 2970 patients in 515 clinical trials between January 2016 to December 2018. We are interested in the referral patterns among patients enrolled in multiple trials. Among 389 patients enrolled in more than one of 288 trials, we aim to identify collaboration networks based on intervention type. Methods: We applied community detection algorithms, including Girvan-Newman and Louvain, and compared them to an author-developed algorithm that utilizes degree centrality and directionality in participant enrollments to identify influential interventions. Community detection was assessed by superimposing sociograms and visualizing the contrast between the in-degree/out-degree distribution of participant enrollments. Results: Application of Girvan Newman, which incorporates edge betweenness but not degree centrality, and Louvain, which does not consider directionality, did not yield informative structure for oncology collaboration networks. The algorithm developed by the authors found intuitively descriptive communities that were supported by the sociograms and visualized in-degree/out-degree distribution. Conclusions: SNA approaches utilizing a combination of degree centrality and edge betweenness can interpret oncology collaboration networks. With this perspective, it is possible to delve deeper into patient engagement and improve the organizational design of clinical trial referrals.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.931
Threshold uncertainty score0.977

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0030.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.066
GPT teacher head0.343
Teacher spread0.277 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it