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Record W4404868892 · doi:10.5376/gab.2024.15.0016

Integrating Functional Genomics with Breeding in Eucommia ulmoides

2024· article· en· W4404868892 on OpenAlexvenueno aff
Ying Zhu, Degang Zhao

Bibliographic record

VenueGenomics and Applied Biology · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicSeed and Plant Biochemistry
Canadian institutionsnot available
FundersGuizhou Academy of Agricultural SciencesNational Natural Science Foundation of China
KeywordsEucommia ulmoidesFunctional genomicsGenomicsBiologyComputational biologyGenomeGeneticsMedicineGene

Abstract

fetched live from OpenAlex

This involved constructing high-density genetic maps, analyzing quantitative trait loci (QTL) for growth traits, and identifying key genes involved in various biological processes. The study successfully constructed a high-density genetic map using single-nucleotide polymorphism (SNP) markers, covering 90% of the E. ulmoides genome with a total genetic distance of 4051.11 cM and an average marker distance of 0.45 cM. A total of 44 QTLs associated with growth traits were identified, along with 33 candidate genes related to energy storage, signal transmission, hormones, and metabolic pathways. Additionally, the genome of E. ulmoides was sequenced, revealing insights into sex differentiation and α-linolenic acid biosynthesis. The study also identified 71 NAC transcription factors and their potential role in rubber biosynthesis, and 119 MYB transcription factors involved in growth and development. The integration of functional genomics with breeding in Eucommia ulmoides has provided a solid foundation for future genetic improvement and breeding programs. The identification of key QTLs and candidate genes will facilitate targeted breeding strategies to enhance desirable traits, thereby improving the economic and ecological value of this important species.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.184
Teacher spread0.170 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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