A PDE-ODE Coupled Model for Biofilm Growth in Porous Media That Accounts for Longitudinal Diffusion and Its Effect on Substrate Degradation
Why this work is in the frame
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Bibliographic record
Abstract
We derive a one-dimensional macroscopic model for biofilm formation in a porous medium reactor to investigate the role of longitudinal diffusion of substrate and suspended bacteria on reactor performance. By comparing an existing base model—one without longitudinal diffusion, which was the point of departure for our work, to the new model—we noticed significant changes in system dynamics. Our results suggest that neglecting it can lead to underestimation of quenching length and biofilm accumulation downstream, even in the advection-dominated regime. The effects of attachment and detachment of suspended bacteria on biofilm formation and substrate degradation were also examined. In the one-dimensional model, it was found that attachment has a stronger influence on substrate depletion, which becomes more pronounced as diffusion in the pore space increases.
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Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.000 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it