MétaCan
Menu
Back to cohort
Record W4405457236 · doi:10.1111/pbr.13232

Genetic Mapping of the Powdery Mildew Resistance Gene <i>Pm13</i> on Oat ( <scp> <i>Avena sativa</i> </scp> ) Chromosome 1D

2024· article· en· W4405457236 on OpenAlexaff
Selma Schurack, Steffen Beuch, Sandy Cowan, Irene Griffiths, Magdalena Lunzer, Laura Morales, Sara Tudor, Hermann Buerstmayr, Catherine Howarth, Nicholas A. Tinker, Matthias Herrmann

Bibliographic record

VenuePlant Breeding · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPowdery Mildew Fungal Diseases
Canadian institutionsAgriculture and Agri-Food Canada
FundersBiotechnology and Biological Sciences Research CouncilDirectorate for Biological Sciences
KeywordsPowdery mildewBiologyAvenaChromosomeGene mappingBotanyPlant disease resistanceGeneResistance (ecology)HorticultureAgronomyGenetics

Abstract

fetched live from OpenAlex

ABSTRACT Powdery mildew, caused by the biotrophic fungus Blumeria graminis DC. f. sp. avenae , is a widespread disease of oats, especially in the temperate regions of Western and Central Europe, and the use of resistant varieties is the most sustainable way to ensure stable yields. Therefore, the identification of robust and effective resistance to powdery mildew is of great interest for oat breedinpg. In contrast to race‐specific resistance genes, adult plant resistance (APR) is generally considered to be more durable. The oat variety ‘Firth’, as well as related varieties such as ‘Husky’ or ‘Flämingstip’, contains an unknown APR gene, which was previously located on chromosome 1D using DArT markers. The aim of this study was to confirm and refine the chromosomal location of this resistance gene, tentatively named Pm13 . To this end, two independent experiments were carried out using different genetic material under natural infection conditions in the field: genome‐wide association mapping (GWAS) in a diverse set of 250 oat lines grown in 10 environments and QTL mapping in a HuskyxAVE1284 biparental population grown in three environments. Both approaches identified a QTL for powdery mildew resistance on the distal end of chromosome 1D in the hexaploid Sang oat genome. The locus explained up to 15% of the phenotypic variance in GWAS and 64% of the phenotypic variance in QTL mapping. Comparison of field data with results from laboratory leaf segment tests confirmed that Pm13 does indeed confer APR. The sequence information of the identified linked markers may allow the development of molecular markers useful for early selection of oat lines with high levels of APR.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.194
Teacher spread0.170 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2024
Admission routes1
Has abstractyes

Explore more

Same venuePlant BreedingSame topicPowdery Mildew Fungal DiseasesFrench-language works237,207