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Record W4405718203 · doi:10.1109/tmbmc.2024.3521984

Single Input Multi Output Model of Molecular Communication via Diffusion With Spheroidal Receivers

2024· article· en· W4405718203 on OpenAlexaff
İbrahim Işık, Mitra Rezaei, Adam Noel

Bibliographic record

VenueIEEE Transactions on Molecular Biological and Multi-Scale Communications · 2024
Typearticle
Languageen
FieldEngineering
TopicMolecular Communication and Nanonetworks
Canadian institutionsMemorial University of Newfoundland
FundersEngineering and Physical Sciences Research Council
KeywordsMolecular communicationDiffusionComputer scienceBiological systemPhysicsTopology (electrical circuits)Electronic engineeringTelecommunicationsBiologyElectrical engineeringEngineeringTransmitterQuantum mechanicsChannel (broadcasting)

Abstract

fetched live from OpenAlex

Spheroids are aggregates of cells that can mimic the cellular organization often found in tissues. Spheroids can be created from various cell types, including cancer cells, stem cells, and primary cells, and they serve as valuable tools in biological research. Although there are initial results on how a molecular signal can propagate between a pair of spheroids, practical experiments typically use clusters of spheroids and there isn’t a good understanding of how neighboring spheroids impact the spatiotemporal dynamics of local molecule propagation. This paper simulates a series of scenarios to gain intuition about propagation in such multi-spheroid systems for applications such as transport and drug delivery. The spheroids are modeled as porous media with a corresponding effective diffusion coefficient. System variations are considered with a higher spheroid porosity (i.e., with a higher effective diffusion coefficient) and molecule uptake by the spheroid cells (approximated as a first-order degradation reaction while molecules diffuse within the spheroid). Results show that a local crowd of spheroids will eventually slow overall propagation, such that molecules stay in the vicinity of the transmitter for longer. The results demonstrate that a single-spheroid receiver model is insufficient to accurately model propagation under these conditions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.769
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.039
GPT teacher head0.244
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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