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Record W4406488641 · doi:10.7717/peerj.18511

What ‘unexplored’ means: mapping regions with digitized natural history records to look for ‘biodiversity blindspots’

2025· article· en· W4406488641 on OpenAlexaff
Laymon Ball, Sheila Rodríguez-Machado, Diego Paredes-Burneo, Samantha Rutledge, David Boyd, David Vander Pluym, Spenser Babb-Biernacki, Austin S. Chipps, Rafet Çağrı Öztürk, Yahya Terzi̇, Prosanta Chakrabarty

Bibliographic record

VenuePeerJ · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicConservation, Biodiversity, and Resource Management
Canadian institutionsCanadian Museum of Nature
Fundersnot available
KeywordsBiodiversityNatural (archaeology)Computer scienceNatural historyGeographyCartographyEcologyBiologyArchaeology

Abstract

fetched live from OpenAlex

We examined global records of accessible natural history voucher collections (with publicly available data and reliable locality data) for terrestrial and freshwater vascular plants, fungi, freshwater fishes, birds, mammals, and herpetofauna (amphibians and reptiles) and highlight areas of the world that would be considered undersampled and sometimes called ‘unexplored’ (i.e., have relatively low, or no evidence of, past sampling efforts) under typical Western-scientific descriptions. We also question what ‘unexplored’ may mean in these contexts and explain how replacing the term in favor of more nuanced phrasing (e.g., ‘biodiversity blindspots,’ which emphasizes the lack of publicly available data about specimens) can mitigate future misunderstandings of natural history science. We also highlight geographic regions where there are relatively few or no publicly available natural history records to raise awareness about habitats that might be worthy of future natural history research and conservation. A major finding is that many of the areas that appear ‘unexplored’ may be in countries whose collections are not digitized (i.e., they don’t have metadata such as GPS coordinates about their voucher specimens publicly available). We call for museums to prioritize digitizing those collections from these ‘biodiversity blindspots’ and for increased funding for museums to aid in these efforts. We also argue for increased scientific infrastructure so that more reference collections with vouchers can be kept in the countries of origin (particularly those countries lacking such infrastructure currently).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.023
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.038

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.023
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0070.009
Science and technology studies0.0010.003
Scholarly communication0.0030.005
Open science0.0010.004
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.208
Teacher spread0.180 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations21
Published2025
Admission routes1
Has abstractyes

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Same venuePeerJSame topicConservation, Biodiversity, and Resource ManagementFrench-language works237,207