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Record W4407736428 · doi:10.1038/s41598-025-89738-y

Towards realistic simulation of disease progression in the visual cortex with CNNs

2025· article· en· W4407736428 on OpenAlexafffund
Jasmine A. Moore, Chris Kang, Vibujithan Vigneshwaran, Emma A. M. Stanley, Ashar Memon, Matthias Wilms, Nils D. Forkert

Bibliographic record

VenueScientific Reports · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCell Image Analysis Techniques
Canadian institutionsHotchkiss Brain InstituteAlberta Children's HospitalOntario Brain InstituteUniversity of Calgary
FundersAlberta Innovates
KeywordsVisual cortexDiseaseComputer scienceCortex (anatomy)NeuroscienceComputational biologyBiologyMedicinePathology

Abstract

fetched live from OpenAlex

Convolutional neural networks (CNNs) and mammalian visual systems share architectural and information processing similarities. We leverage these parallels to develop an in-silico CNN model simulating diseases affecting the visual system. This model aims to replicate neural complexities in an experimentally controlled environment. Therefore, we examine object recognition and internal representations of a CNN under neurodegeneration and neuroplasticity conditions simulated through synaptic weight decay and retraining. This approach can model neurodegeneration from events like tau accumulation, reflecting cognitive decline in diseases such as posterior cortical atrophy, a condition that can accompany Alzheimer's disease and primarily affects the visual system. After each degeneration iteration, we retrain unaffected synapses to simulate ongoing neuroplasticity. Our results show that with significant synaptic decay and limited retraining, the model's representational similarity decreases compared to a healthy model. Early CNN layers retain high similarity to the healthy model, while later layers are more prone to degradation. The results of this study reveal a progressive decline in object recognition proficiency, mirroring posterior cortical atrophy progression. In-silico modeling of neurodegenerative diseases can enhance our understanding of disease progression and aid in developing targeted rehabilitation and treatments.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.020
Threshold uncertainty score0.040

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.326
Teacher spread0.320 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes2
Has abstractyes

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