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Record W4407736428 · doi:10.1038/s41598-025-89738-y

Towards realistic simulation of disease progression in the visual cortex with CNNs

2025· article· en· W4407736428 on OpenAlexafffund
Jasmine A. Moore, Chris Kang, Vibujithan Vigneshwaran, Emma A. M. Stanley, Ashar Memon, Matthias Wilms, Nils D. Forkert

Bibliographic record

VenueScientific Reports · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCell Image Analysis Techniques
Canadian institutionsHotchkiss Brain InstituteAlberta Children's HospitalOntario Brain InstituteUniversity of Calgary
FundersAlberta Innovates
KeywordsVisual cortexDiseaseComputer scienceCortex (anatomy)NeuroscienceComputational biologyBiologyMedicinePathology

Abstract

fetched live from OpenAlex

Convolutional neural networks (CNNs) and mammalian visual systems share architectural and information processing similarities. We leverage these parallels to develop an in-silico CNN model simulating diseases affecting the visual system. This model aims to replicate neural complexities in an experimentally controlled environment. Therefore, we examine object recognition and internal representations of a CNN under neurodegeneration and neuroplasticity conditions simulated through synaptic weight decay and retraining. This approach can model neurodegeneration from events like tau accumulation, reflecting cognitive decline in diseases such as posterior cortical atrophy, a condition that can accompany Alzheimer's disease and primarily affects the visual system. After each degeneration iteration, we retrain unaffected synapses to simulate ongoing neuroplasticity. Our results show that with significant synaptic decay and limited retraining, the model's representational similarity decreases compared to a healthy model. Early CNN layers retain high similarity to the healthy model, while later layers are more prone to degradation. The results of this study reveal a progressive decline in object recognition proficiency, mirroring posterior cortical atrophy progression. In-silico modeling of neurodegenerative diseases can enhance our understanding of disease progression and aid in developing targeted rehabilitation and treatments.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.072
Threshold uncertainty score0.173

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.326
Teacher spread0.320 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes2
Has abstractyes

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