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Record W4407868985 · doi:10.1101/2025.02.22.639683

Strong amplification of quantitative genetic variation under a balance between mutation and fluctuating stabilizing selection

2025· preprint· en· W4407868985 on OpenAlexaff
Jason Bertram, Zahra Shafiei

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsWestern University
Fundersnot available
KeywordsSelection (genetic algorithm)Balance (ability)MutationVariation (astronomy)Genetic variationBiologyGeneticsComputer sciencePhysicsAstrophysicsGeneArtificial intelligence

Abstract

fetched live from OpenAlex

Abstract The observation of high heritability in most quantitative traits has been a long-standing puzzle. There is a general consensus that simple models of quantitative genetic variation, which are mostly founded on the assumption of mutation-selection balance in a constant environment, have failed to explain high heritability. To make matters worse, the reasons for failure are unknown, leaving little to guide future model developments. Here we revisit this puzzle by taking the canonical Latter-Bulmer model and relaxing the assumption of perfect environmental stasis. Instead we assume that the trait optimum changes slowly but steadily in a random walk (specifically, an Ornstein-Uhlenbeck process), similar to standard models used for phylogenetic comparative methods. We show that our model behaves qualitatively differently to its stationary optimum counterpart even though the optimum only changes slowly. This is the result of a feedback between the adaptation rate and selection coefficient fluctuations. The heritability predictions resulting from this feedback are more consistent with observations and also less sensitive to evolutionary parameters than the classical LB model. We derive a simple formula to predict genetic variation under random walk optimum fluctuations which helps to explain some of our counter-intuitive results and which should be useful for understanding the potential influence of fluctuations in future work. Since the feedback driving our results should also occur in more complex models e.g. with multiple traits, we argue that environmental change has been an essential biological ingredient missing in previous mutation-selection balance models of quantitative trait heritability.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.254
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2025
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicGenetic and phenotypic traits in livestock→French-language works237,207→