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Record W4408163483 · doi:10.1128/mra.01277-24

Draft genome sequence of emerging pathogen <i>Morganella morganii</i> strain PS00513 isolated from a chronic surgical wound

2025· article· en· W4408163483 on OpenAlexaff
Kira Noelle Allison, Rayhane Mejlaoui, Katrina G. DeZeeuw, Jonah E. Marek, Edana Cassol, Joerg Overhage

Bibliographic record

VenueMicrobiology Resource Announcements · 2025
Typearticle
Languageen
FieldMedicine
TopicSurgical site infection prevention
Canadian institutionsSaint-Vincent HospitalCarleton University
Fundersnot available
KeywordsMorganella morganiiWhole genome sequencingMicrobiologyStrain (injury)BiologyPathogenInsertion sequenceGenomeGeneticsGeneEnterobacteriaceaeAnatomyTransposable element

Abstract

fetched live from OpenAlex

ABSTRACT We report the draft genome sequence and antimicrobial resistance gene profile of Morganella morganii strain PS00513. This strain was isolated from a chronic surgical wound infection of an adult male patient. The chromosome is 3.87 Mb long and accompanied by a 9.6 kb plasmid, which both contain multiple antibiotic resistance genes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.015
Threshold uncertainty score0.029

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0020.006
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0040.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.277
Teacher spread0.264 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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