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Record W4408301650 · doi:10.1111/jeu.70005

Cultivation of <i>Ancyromonas melba</i>, and Reclassification as the Type Species of <i>Divimonas</i> gen. nov., a Phylogenetically Important Ancyromonad Lineage

2025· article· en· W4408301650 on OpenAlexafffund
Kate M. Barkhouse, Yana Eglit, E. J. Weston, Alastair G. B. Simpson

Bibliographic record

VenueJournal of Eukaryotic Microbiology · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtist diversity and phylogeny
Canadian institutionsUniversity of VictoriaDalhousie University
FundersNatural Sciences and Engineering Research Council of CanadaUniversité Paris-SudDalhousie University
KeywordsBiologyLineage (genetic)Phylogenetic treeEvolutionary biologyType speciesFlagellumPhylogeneticsGenusTaxonomy (biology)ZoologyGeneGenetics

Abstract

fetched live from OpenAlex

Ancyromonadida is a taxon of small heterotrophic flagellates occupying an unresolved but deep-branching position in the eukaryotic tree of life, thus suspected to be important to studies of early eukaryotic evolutionary relationships and the characteristics of the last eukaryotic common ancestor. Sampling and cultivation of the full diversity of ancyromonad species are therefore areas of considerable interest. Ancyromonas melba is a species originally described from hypersaline material for which no monoprotistan culture or molecular data have been available, but whose distinct morphology suggests it may represent a new major lineage within Ancyromonadida. We report the first cultivation of this morphospecies in hypersaline media, with characterization including scanning electron microscopy and small subunit rRNA gene sequencing. Distinguishing morphological features include the predominantly ventral placement of the ventral groove, the approximately equal thickness of the anterior and posterior flagella, and the relatively long anterior flagellum. Phylogenetic analysis shows that the isolate does not branch within Ancyromonas or any other currently described genus of Ancyromonadida, but represents a novel genus-level lineage, the position of which within ancyromonads could not be robustly inferred. We therefore propose a new genus for this species and rename it Divimonas melba n. gen., n. comb.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.235
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

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