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A collaborative study to validate in vitro assays for protein digestibility assessment using pH-drop and pH-stat methods.

2025· preprint· en· W4408811531 on OpenAlexaff
Erin Goldberg, Amanda Gomes Almeida Sá, Adam Franczyk, Elaine S. Krul, Barbara J. Lyle, Fiona Liu, Xin Wu, Nandika Bandara, G. J. Brisson, Lingyun Chen, Sharon Hooper, Lamia L’Hocine, M.T. Nickerson, Matthew G. Nosworthy, James D. House

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldNursing
TopicClinical Nutrition and Gastroenterology
Canadian institutionsAgriculture and Agri-Food CanadaUniversity of SaskatchewanUniversity of AlbertaUniversité LavalUniversity of Manitoba
Fundersnot available
KeywordsDrop (telecommunication)statIn vitroChemistryChromatographyBiochemistryComputer scienceTelecommunicationsPhosphorylation

Abstract

fetched live from OpenAlex

Protein digestibility is a crucial determinant of nutritional quality in foods, influencing how well the body can utilize amino acids derived from dietary protein. Historically, protein digestibility has been measured using in vivo rodent bioassays, particularly in calculating the PDCAAS. However, with growing public and scientific concerns over the ethical implications of animal testing, there is an urgent need for validated in vitro methods that are scientifically reliable and ethically sound. This report presents findings from an international collaborative study aimed at generating necessary data to position two in vitro methods—the pH-drop and pH-stat assays—for determining protein digestibility as candidates for method approval by an accrediting body. Nine laboratories participated in the study, analyzing 12 diverse protein ingredients from both plant and animal sources having previously published true fecal protein digestibility values. Mean relative standard deviations for repeatability ranged from 0.8-2.1% and 0.5-4.8% and mean relative standard deviation for reproducibility ranged from 1.2-3.6% and 1.1-4.9% for the pH-drop and pH-stat methods, respectively. The strong repeatability and reproducibility of both in vitro methods and the achievement of an official accreditation represent a critical advancement in the process toward acceptance by regulatory adoption as alternatives to in vivo testing to determine protein quality by PDCAAS. The validated methods presented here provide a reliable, affordable, and non-animal-based way to account for protein digestion in food formulation. While regulatory approval is required for use on food labels, these tools are immediately available to product developers to guide ingredient choices and processing decisions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.107
metaresearch head score (Gemma)0.040
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.107
Threshold uncertainty score0.566

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1070.040
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0020.001
Science and technology studies0.0030.002
Scholarly communication0.0030.002
Open science0.0030.005
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0030.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.078
GPT teacher head0.482
Teacher spread0.404 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes1
Has abstractyes

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