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Record W4409058582 · doi:10.1109/tbme.2025.3556793

Design and Modeling of a Bio-Inspired <i>Aequorin</i> -Based Light-Emitting Unit: Applications in Optogenetics and Beyond

2025· article· en· W4409058582 on OpenAlexaff
Arash Azarnoush, Oussama Abderrahmane Dambri, Eslin Üstün Karatop, Abdelhakim Hafid

Bibliographic record

VenueIEEE Transactions on Biomedical Engineering · 2025
Typearticle
Languageen
FieldNeuroscience
TopicPhotoreceptor and optogenetics research
Canadian institutionsUniversité de MontréalUniversity of Ottawa
Fundersnot available
KeywordsOptogeneticsUnit (ring theory)AequorinComputer scienceEngineeringNeuroscienceMaterials scienceBiologyPsychology

Abstract

fetched live from OpenAlex

Biophotonics includes a wide range of applications that use light-based technologies to investigate and manipulate biological systems. Traditionally, bioluminescence has been extensively used as a reporting agent in various biophotonics applications. However, its potential as a light source has not been explored. In this study, we propose the use of wireless Aequorin-based illumination as a bioinspired light-emitting source within biological tissue. This approach can have applications in a range of technologies; from optogenetics to bio-optical communications to human-brain interfaces. Drawing inspiration from the natural bioluminescent properties found in marine organisms, we designed a wireless Aequorin-based bioluminescence unit and developed an equivalent circuit model to describe the biological processes involved in illumination. Our model predicts the behavior of the bioluminescent units under various physical conditions, offering a framework for understanding how variations in physical parameters influence luminescence characteristics. In the absence of experimental studies focusing on Aequorin-based bioluminescence as a light source, our findings provide valuable guidance for researchers. These insights can help in understanding the system's behavior, designing more complex bioluminescence systems composed of multiple illumination units, and selecting parameters for future experimental research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.802
Threshold uncertainty score0.558

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.287
Teacher spread0.256 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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