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Record W4409101111 · doi:10.1101/2025.04.02.646789

Principles underlying implementation of <i>nearly</i> -homeostatic biological networks

2025· preprint· en· W4409101111 on OpenAlexafffund
Zhe Tang, David R. McMillen

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGene Regulatory Network Analysis
Canadian institutionsUniversity of Toronto
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsHomeostasisBiologyCell biology

Abstract

fetched live from OpenAlex

SUMMARY A nearly-homeostatic biological system keeps the steady-state output (like internal body temperature) within a narrow range, regardless of different persistent levels of environmental perturbations (like external temperatures). A nearly-homeostatic system can guarantee performance of a therapeutic device in different patient contexts or can be a detector that generates a response only upon encountering an anomaly. We have developed the inverse homeostasis perspective to determine the impact of each parameter on the system’s homeostatic performance, which has allowed us to vastly widen the region of implementable parameter sets supporting near-homeostasis compared to the predominant approach of minimizing the controller’s integration leakiness. To implement nearly-homeostatic systems without measuring parameter values, we have used feedback-free auxiliary systems to accurately approximate steady-state response curves of key components of the feedback system and adjusted those curves to attain desired characteristics. Our approach has not only discovered a new mechanism of near-homeostasis, but also serves as a new framework to reinterpret whether the homeostatic performance observed in previously published systems arises from the mechanisms originally proposed to explain the behaviour.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.002
Scholarly communication0.0020.002
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.268
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

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