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Record W4409308678 · doi:10.3389/fcvm.2025.1523997

Use of serum long non-coding RNA expression panel as a marker for diabetic retinopathy

2025· article· en· W4409308678 on OpenAlexaff
Eric Wang, Shali Chen, Biao Feng, Selina Liu, John R. Gonder, Tom Sheidow, Phil Hooper, Subrata Chakrabarti

Bibliographic record

VenueFrontiers in Cardiovascular Medicine · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related molecular mechanisms research
Canadian institutionsLondon Health Sciences CentreSt. Joseph's HospitalWestern University
Fundersnot available
KeywordsDiabetic retinopathyMedicineRetinopathyInternal medicineDiabetes mellitusOphthalmologyEndocrinology

Abstract

fetched live from OpenAlex

Introduction: Diabetic retinopathy (DR) is the most common chronic complication of diabetes, the leading cause of vision impairments in working-aged adults, and a significant cause of reduced quality of life for diabetic patients. Diabetic patients are recommended to have regular screening in order to catch DR at an early enough stage for effective management. However, due to a variety of factors, many patients can still fall through the cracks with the current screening methods. Methods: Several long non-coding RNAs (lncRNAs), essential regulators of physiological and pathological processes, were previously identified by us as potential markers for DR phenotypes. In this study, we used a significantly larger sample set to validate our panel of lncRNAs. We also explored the possibility of creating a statistical model to detect DR from serum samples using the expression profiles of these lncRNAs. Results: Our regression models, based solely on lncRNA expression data, demonstrated the ability to adequately detect DR and potentially predict it. Models based solely on lncRNA expression performed equally or better compared to models with additional patient information. The models showed promising performance, suggesting that serum lncRNA expression profiles could serve as reliable markers for DR detection. Discussion: Further longitudinal studies are necessary to validate the model's capability to predict retinopathy in diabetic patients not yet diagnosed with DR. Nevertheless, our findings indicate that this lncRNA panel may offer a viable option for a simple, accessible, and convenient blood-based screening test for DR.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.264
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractyes

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