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Record W4409666971 · doi:10.1016/j.cell.2025.03.033

Root microbiota regulates tiller number in rice

2025· article· en· W4409666971 on OpenAlexfundno aff
Jingying Zhang, Bing Wang, Haoran Xu, Weidong Liu, Jingwei Yu, Qiuxia Wang, Hong Yu, Jin‐Wei Wei, Rui Dai, Jinghang Zhou, Yuhang He, Di Zou, Jinhua Yang, Xinwei Ban, Qingliang Hu, Xiangbing Meng, Yongxin Liu, Binglei Wang, Bin Hu, Mingyu Wang, Peiyong Xin, Jinfang Chu, Changsheng Li, Rubén Garrido‐Oter, Peng Yu, Aalt D. J. van Dijk, Lemeng Dong, Harro J. Bouwmeester, Song Gao, Ancheng C. Huang, Chengcai Chu, Jiayang Li, Yang Bai

Bibliographic record

VenueCell · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicLegume Nitrogen Fixing Symbiosis
Canadian institutionsnot available
FundersNational Key Research and Development Program of ChinaShenzhen Science and Technology Innovation ProgramEuropean Research CouncilUniversity of North Carolina at Chapel HillSun Yat-sen UniversityMinistry of Education, IndiaMax-Planck-GesellschaftNederlandse Organisatie voor Wetenschappelijk OnderzoekMinisterie van Onderwijs, Cultuur en WetenschapNational Natural Science Foundation of ChinaChina Academy of Chinese Medical SciencesChinese Academy of SciencesSun Yat-sen University Cancer CenterMinistry of Education of the People's Republic of ChinaCanadian Anesthesiologists' Society
KeywordsBiologyTiller (botany)Root (linguistics)GeneticsBotany

Abstract

fetched live from OpenAlex

Rice tillering is an important agronomic trait regulated by plant genetic and environmental factors. However, the role and mechanism of the root microbiota in modulating rice tillering have not been explored. Here, we examined the root microbiota composition and tiller numbers of 182 genome-sequenced rice varieties grown under field conditions and uncovered a significant correlation between root microbiota composition and rice tiller number. Using cultivated bacterial isolates, we demonstrated that various members of the root microbiota can regulate rice tillering in both laboratory and field conditions. Genetic, biochemical, and structural analyses revealed that cyclo(Leu-Pro), produced by the tiller-inhibiting bacterium Exiguobacterium R2567, activates the rice strigolactone (SL) signaling pathway by binding to the SL receptor OsD14, thus regulating tillering. The present work provides insight into how the root microbiota regulates key agronomic traits and offers a promising strategy for optimizing crop growth by harnessing the root microbiota in sustainable agriculture.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.333
Threshold uncertainty score0.755

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.204
Teacher spread0.197 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations48
Published2025
Admission routes1
Has abstractyes

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