GLYCOSYLATION OF ANTI-DSDNA IGG CORRELATES WITH ORGAN INVOLVEMENT IN TREATMENT-NAÏVE SYSTEMIC LUPUS ERYTHEMATOSUS PATIENTS
Bibliographic record
Abstract
PV039 / #308 Poster Topic: AS04 - Biomarkers Background/Purpose Anti-double-stranded DNA (anti-dsDNA) antibodies are important antibodies in systemic lupus erythematosus (SLE). Glycosylation is one of the most commonly post-translational modifications of antibodies, and anti-dsDNA antibodies glycosylation is related with SLE disease activity. However, the association of anti-dsDNA antibodies glycosylation and SLE organ involvement is still unclear. Methods We enrolled 86 consecutive treatment-naïve SLE patients with positive anti-dsDNA antibodies from the Department of Rheumatology and Immunology at Ruijin Hospital, Shanghai, between 2017 and 2022. Serum samples were used in this study. We quantified and classified the organ involvement degree of SLE patients according to the number of organ systems involved in each patient. Then we analyzed each glycoform and combination of glycoforms based on the involvement degree. Random Forest Classifier and Artificial Neural Network were applied to evaluate the correlation between combinations of glycoforms and the organ involvement degree (Figure 1). Figure 1. Workflow of classifying and predicting the involvement degree of organ systems in SLE patients by leveraging glyco-pairs. Results Pearson correlation analysis presented a strong connection between involved organs compared with uninvolved organs in SLE patients. The bisection(Bis) of IgG3/4, galactosylation (Gal) of IgG1, fucosylation (Fuc) of IgG1, and sialylation (Sia) of IgG2 displayed high Area under Curve (AUC) values when combined with other glycoforms for classifying the involvement degree. The result of Random Forest showed that the combination of IgG1Gal&IgG3/4Bis had the highest accuracy (0.7692) and AUC value (0.8187). In terms of predicting the involvement rate using Artificial Neural Network, IgG3/4Bis&IgG1Gal had the lowest MSE (0.0244) (Figure 2). Figure 2. The results of the RF classification model on glyco-pairs. In a-f, the dots on the figure represented the original samples and the grid-like background colors represented the output of the model. Dots sharing the same color with the background color were correctly classified by the RF model. The accuracy might seem smaller than the intuition as it was derived solely from the test set’s samples. In g-l, ROC of the RF models were plotted. AUC, 95% CI and p-value all reflected the performance of a an RF model. A larger AUC value and a wider gap between the 95% CI and 0.5 suggested a better classification ability of the glyco-pair. In both evaluation metrics, glyco-pair IgG1Gal&IgG3/4Bis performed the best. Abbreviations: AUC: Area under Curve; ROC: Receiver Operating Curves; CI: confidence interval. Conclusions Our study showcased the effectiveness of combining glycotypes to classify and predict SLE organ involvement degree. Different glycotypes were correlated with the involvement degree to different extents, and the combination of IgG3/4Bis&IgG1Gal had best correlation with SLE organ involvement.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.002 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".