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Record W4411328790 · doi:10.1038/s41592-026-03066-1

A Multimodal Adaptive Optical Microscope For In Vivo Imaging from Molecules to Organisms

2025· preprint· en· W4411328790 on OpenAlexaff
Tian-Ming Fu, Gaoxiang Liu, Daniel E. Milkie, Xiongtao Ruan, Frederik Görlitz, Yu Shi, Valentina Ferro, Nikita S. Divekar, Wei Wang, Harrison M. York, Velat Kilic, Matthew Mueller, Yajie Liang, Timothy A. Daugird, María José Gacha Garay, Kathryn A. Larkin, Rebecca C. Adikes, N Harrison, Cyna Shirazinejad, Shara C. Williams, Jamison L. Nourse, Shu‐Hsien Sheu, Liang Gao, Tongchao Li, Chandrani Mondal, Kemal Achour, Wilmene Hercule, Daniel R. Stabley, Kevin Emmerich, Peng Dong, David G. Drubin, Zhe Liu, David E. Clapham, Jeff S. Mumm, Minoru Koyama, Alison N. Killilea, Jose Javier Bravo‐Cordero, C. Dirk Keene, Liqun Luo, Tomas Kirchhausen, Medha M. Pathak, Senthil Arumugam, James K. Nuñez, Ruixuan Gao, David Q. Matus, Benjamin L. Martin, Ian A. Swinburne, Eric Betzig, Wesley R. Legant

Bibliographic record

VenueNature Methods · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced Fluorescence Microscopy Techniques
Canadian institutionsThe Scarborough Hospital
Fundersnot available
KeywordsMulticellular organismMicroscopeOptical imagingMicroscopyBiological imagingNanoscopic scaleComputer scienceNanotechnologyMaterials scienceOpticsBiologyPhysics

Abstract

fetched live from OpenAlex

Understanding biological systems requires observing features and processes across vast spatial and temporal scales, spanning nanometers to centimeters and milliseconds to days, often using multiple imaging modalities within complex native microenvironments. Yet, achieving this comprehensive view is challenging because microscopes optimized for specific tasks typically lack versatility due to inherent optical and sample handling trade-offs, and frequently suffer performance degradation from sample-induced optical aberrations in multicellular contexts. Here, we present MOSAIC, a reconfigurable microscope that integrates multiple advanced imaging techniques including light-sheet, label-free, super-resolution, and multi-photon, all equipped with adaptive optics. MOSAIC enables non-invasive imaging of subcellular dynamics in both cultured cells and live multicellular organisms, nanoscale mapping of molecular architectures across millimeter-scale expanded tissues, and structural/functional neural imaging within live mice. MOSAIC facilitates correlative studies across biological scales within the same specimen, providing an integrated platform for broad biological investigation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.395
Teacher spread0.385 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractyes

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