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Record W4412448510 · doi:10.1016/j.indcrop.2025.121504

Metabolomics fingerprint of three Clematis L. species by UPLC-MS/MS for geographical and varietal classification

2025· article· en· W4412448510 on OpenAlexaff
Yanjie Dong, Yubo Wu, Wenbo Wang, Lei Wang

Bibliographic record

VenueIndustrial Crops and Products · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsMinistry of Agriculture
FundersScience and Technology Development Plan of Shandong Province
KeywordsClematisMetabolomicsFingerprint (computing)BiologyBotanyTraditional medicineArtificial intelligenceBioinformaticsComputer scienceMedicine

Abstract

fetched live from OpenAlex

Clematis L. is a genus with global distribution and significant usage in traditional Chinese medicine. Traditionally, species authentication for Clematis L. has relied on morphological characteristics, but such method is susceptible to errors and lacks reproducibility. In this study, an untargeted UPLC-MS/MS-based metabolomics approach was employed to comprehensively discriminate Clematis tangutica (Maxim.) Korsh, C. intricata and Clematidis Radix et Rhizoma (CRR) from eight provinces in China. 2331 differential metabolites were identified by principal components analysis (PCA) and orthogonal partial least-squares discriminant analysis (OPLS-DA), which revealed distinct separations among the studied regions. The KEGG metabolic pathway analysis showed that flavone and flavonol biosynthesis and flavonoid biosynthesis were closely associated with geographical origin. This work established the metabolomics evidence that flavonoid biosynthesis serves as a biochemical signature of geographical adaptation in Clematis, providing a scientific foundation for precise origin traceability, resource conservation, and quality standardization of medicinal species in traditional Chinese medicine.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.258
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes1
Has abstractyes

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