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Record W4413066140 · doi:10.5376/bm.2025.16.0013

Mitochondrial Genome Evolution of Abalone and Its Applications in Species Identification

2025· article· en· W4413066140 on OpenAlexvenueno aff
Rudi Mai

Bibliographic record

VenueBioscience Methods · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicIdentification and Quantification in Food
Canadian institutionsnot available
Fundersnot available
KeywordsAbaloneIdentification (biology)Evolutionary biologyBiologyGenomeComputational biologyMitochondrial DNAZoologyEcologyFisheryGeneticsGene

Abstract

fetched live from OpenAlex

The genus Haliotis includes a variety of marine shellfish with important economic and ecological values. In recent years, the mitochondrial genome has received extensive attention in the study of abalone systematic classification and species identification due to its unique advantages. This study systematically sorted out the structural characteristics of the abalone mitochondrial genome, the genetic variation pattern and the evolutionary relationship between different species, focusing on the analysis of the role of SNP and non-synonymous mutations in adaptive evolution. Through the construction of a whole-genome phylogenetic tree, the lineage differentiation and geographical isolation correlation within the genus Haliotis were revealed, and the application potential of mitochondrial DNA markers (such as COI gene) in rapid species identification and traceability detection was evaluated. Combined with case analysis, the mitochondrial variation characteristics of abalone species in the southeast coast of China were compared, the genetic differences between introduced populations and local populations were evaluated, and the disputes over the classification of abalone in Japan, Australia and East Asia were discussed. The study shows that the evolutionary characteristics of the abalone mitochondrial genome are of great value for species identification, but different methods have their own advantages and limitations. This study aims to provide a basis for the systematic classification of the abalone genus, and to provide theoretical support for the scientific management of my country's abalone germplasm resources, the protection of genetic diversity and sustainable utilization, so as to improve the quality of abalone seed industry and ensure the ecological security of marine fisheries.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.016

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.364
Teacher spread0.338 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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