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Record W4413108550 · doi:10.1038/s41564-025-02084-7

FungAMR: a comprehensive database for investigating fungal mutations associated with antimicrobial resistance

2025· article· en· W4413108550 on OpenAlexafffund
Camille Bédard, Alicia Pageau, Anna Fijarczyk, David Mendoza-Salido, Alejandro J Alcañiz, Philippe C Després, Romain Durand, Samuel Plante, Emilie M. M. Alexander, François D. Rouleau, David Jordan, Mathieu Giguère, Jehoshua Sharma, Laetitia Maroc, Nicholas C Gervais, Anagha C.T. Menon, Isabelle Gagnon‐Arsenault, Johanna Rhodes, Philippe J. Dufresne, Amrita Bharat, Adnane Sellam, Domenica G. De Luca, Aleeza C. Gerstein, Rebecca S. Shapiro, Narciso M. Quijada, Christian R. Landry

Bibliographic record

VenueNature Microbiology · 2025
Typearticle
Languageen
FieldMedicine
TopicMicrobial Natural Products and Biosynthesis
Canadian institutionsPublic Health Agency of CanadaUniversité LavalUniversité de MontréalUniversity of GuelphUniversity of ManitobaInstitut National de Santé Publique du QuébecMontreal Heart Institute
FundersNatural Sciences and Engineering Research Council of CanadaWellcome TrustHORIZON EUROPE Framework ProgrammeInternational Seafood Sustainability FoundationFonds de Recherche du Québec - SantéUniversité LavalMinisterio de Ciencia, Innovación y UniversidadesEuropean CommissionMcMaster UniversityResearch ManitobaCanadian Institutes of Health ResearchAgencia Estatal de InvestigaciónFonds de recherche du Québec – Nature et technologiesGenome CanadaCanadian Institute for Advanced Research
KeywordsAntibiotic resistanceAntimicrobialBiologyComputational biologyMicrobiologyDatabaseGeneticsBacteriaComputer science

Abstract

fetched live from OpenAlex
No abstract in any covered source. Its absence is recorded, not treated as a negative.

No abstract. This is not a gap in this database; OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.056
Threshold uncertainty score0.829

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.278
Teacher spread0.263 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations34
Published2025
Admission routes2
Has abstractno

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