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Record W4413137968 · doi:10.1128/mra.00287-25

Draft genome sequence of <i>Vibrio pectenicida</i> strain FHCF-3, a causative agent of sea star wasting disease in the sunflower sea star ( <i>Pycnopodia helianthoides</i> ), reveals the genetic potential to produce aerolysin-like toxins

2025· article· en· W4413137968 on OpenAlexafffund
Kevin Xu Zhong, Amy M. Chan, Melanie B. Prentice, Yasmine Gouin, C. Drew Harvell, Alyssa‐Lois M. Gehman, Curtis A. Suttle

Bibliographic record

VenueMicrobiology Resource Announcements · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicBacteriophages and microbial interactions
Canadian institutionsFisheries and Oceans CanadaUniversity of British Columbia
FundersBritish Columbia Knowledge Development FundNatural Sciences and Engineering Research Council of CanadaUniversity of British ColumbiaCanada Foundation for InnovationTula Foundation
KeywordsSequence (biology)Whole genome sequencingComputational biologyGenomeBiologyGeneticsEvolutionary biologyGene

Abstract

fetched live from OpenAlex

ABSTRACT Here, we report the genomic sequence of Vibrio pectenicida strain FHCF-3, isolated from the coelomic fluid of a sunflower sea star ( Pycnopodia helianthoides ) showing signs of wasting disease. The draft genome is 4,368,354 bp with 3,903 coding sequences, including 3 with significant sequence similarity to aerolysin-like toxins.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.917
Threshold uncertainty score0.956

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.244
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes2
Has abstractyes

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