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Record W4413141620 · doi:10.1101/2025.08.11.669641

Dynamic Micropatterning Reveals Spatial Dynamics of B Cell Receptor Signaling and Immune Synapse Formation

2025· preprint· en· W4413141620 on OpenAlexaff
Blanca Tejeda-González, Sara Hernández‐Pérez, Elmeri Kiviluoto, Johanna Ivaska, Pieta K. Mattila

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldImmunology and Microbiology
TopicT-cell and B-cell Immunology
Canadian institutionsInstitute of Infection and Immunity
FundersBiocenter Finland
KeywordsMicropatterningImmunological synapseSynapseImmune systemDynamics (music)Cell biologySynapse formationReceptorCellNeuroscienceChemistryBiologyNanotechnologyT cellImmunologyMaterials sciencePhysicsBiochemistryT-cell receptor

Abstract

fetched live from OpenAlex

B cell activation by foreign antigens, recognized by the B cell receptor (BCR), is the key prerequisite for cell differentiation for antibody production. B cells typically encounter antigens bound to the surface of antigen presenting cells (APCs), leading to the formation of the immunological synapse (IS). To gain a deeper understanding of lymphocyte activation, we developed a dynamic micropatterning technique that enables the modeling of IS formation with exceptional spatial and temporal control. Using this method, we can image B cells before and after BCR engagement, in both fixed and live samples. We compared the activation of different BCR proximal signaling proteins in activatory and non-activatory areas of the synapse and found that the activated signaling proteins exhibited distinct spatial distributions. While pCD79A was strongly localized in the antigen-tethered area, surprisingly, pPLCγ2 was enriched in regions lacking BCR ligands. We also visualized the formation of the IS in living cells using enhanced-resolution microscopy in 3D. We identified different cell behaviors during this process, including the repurposing of pre-existing actin-based protrusions as ready-made building blocks for the IS — a feature uniquely detectable with this highly controllable system. Extending our approach to include a co-stimulatory B cell ligand, ICAM-1, and T cell system using CD3 and CD28 antibodies as ligands, we demonstrate the broader applicability of this method. Overall, our results highlight the power of dynamic micropatterning in elucidating the rapid and dynamic earliest steps of the IS formation with high spatial and temporal precision.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.195
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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