Whole genome sequencing and annotations of Trametes sanguinea ZHSJ
Bibliographic record
Abstract
Trametes sanguinea belongs to the polyporaceae family and its fruiting body possesses several benefits. In the current study, Trametes sanguinea ZHSJ (T. sanguinea ZHSJ) isolated from the chestnut tree wood was studied for its whole genome sequence and transcriptome sequence with their annotations. T. sanguinea ZHSJ genome is 41.3243 Mb in length with a total of 135 contigs with N50 contig length 2.8138 Mb. A total of 10886 genes of T. sanguinea ZHSJ were annotated. Further, RNA sequencing and assembly represented 11861 genes, out of these 10,507 genes were annotated with four annotation databases. Moreover, denovo prediction annotation performed by Funannotate represented 12,268 coding genes and simple sequence repeats (SSR) prediction represented total 1,242 SSR and among them 707 were trinucleotide repeat motifs.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.001 | 0.002 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.002 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".