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Identifying Adaptable Varieties of Sorghum (Sorghum bicolor L) in Tidal Swamplands and Sandy Soils by MGIDI and GGE Biplots

2025· preprint· en· W4414111555 on OpenAlexaff
Twenty Liana, Suwardi Suwardi, Retna Qomariah, Susi Lesmayati, Andy Bhermana, Dwi P. Widiastuti, YantiRina Darsani

Bibliographic record

VenueF1000Research · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Mapping and Diversity in Plants and Animals
Canadian institutionsInstitute on Governance
Fundersnot available
KeywordsSorghumAdaptabilityBiplotForageRandomized block designArable landSoil waterCrop

Abstract

fetched live from OpenAlex

Background Sorghum has potential as a source of material for food, bioenergy, and animal feed, making it a worthy candidate for promotion. This cereal thrives in regions characterized by low moisture and dry conditions. To address the diminishing availability of arable dry land, it may be necessary to explore the cultivation of sorghum in tidal swamplands and sandy soils. Methods Twelve sorghum varieties were evaluated in tidal swamplands during the rainy and dry seasons, as well as in sandy soil during the dry season, using two levels of organic fertilizers to create six test environments. The experiments were arranged in a completely randomized block design with three replications. To choose sorghum varieties with features that closely resemble an idealized sorghum variety, the Multi-trait Genotype-Ideotype Distance Index (MGIDI) was utilized. Simultaneously, genotype plus genotype-environment interaction (GGE) biplots were employed to determine the best circumstances for choosing broadly adaptable varieties that exhibit desirable features, as well as to find varieties that thrive environmental contexts. Result Based on the MGIDI ranking on the average across environment, two varieties, i.e., Numbu and Kawali were selected. However selected varieties in each environment differed due to significant variety-environment interaction. In terms of grain weight, the Soper 7 Agritan variety exhibits adaptability across diverse environments, while the Numbu variety likewise demonstrates versatility in various environmental conditions. When evaluating forage yield, several adaptable varieties have emerged. Tidal swamplands treated with a high application of organic fertilizer, as well as sandy soils, provide optimal environments for selecting broadly adaptable varieties that focus on both grain and forage yields. Conclusion Adaptable varieties differ for various groups of environments and different traits under consideration. Optimal environments for identifying broadly adaptable varieties varied by trait. The MGIDI would be a valuable tool for selecting varieties based on multiple traits, provided that the test environment are broadly varies. In parallel, the GGE biplots effectively identifies adaptable varieties based on individual traits.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Direct model labels (unvalidated)

Per-model category and study-design labels from the labeling rounds. They are machine output, unvalidated, and the disagreement between models ships as data. No study design here is MEDLINE-validated yet.

Model armCategoriesStudy designConfidence
gemmano category
Domain: not available · Genre: Empirical
About the Canadian research system: no · About a Canadian topic: no
Observationallow
gptno category
Domain: not available · Genre: Empirical
About the Canadian research system: no · About a Canadian topic: no
Bench or experimentalhigh
models splitAgreement compares identical category sets and study designs across arms.

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.300
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Labeled directly by 2 models reading the full record.

The models applied no category: nothing in the taxonomy fit this work.

The models disagree on parts of this classification; every voice is preserved in the section at the end of the page.

Study designObservational · Bench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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