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Record W4414234929 · doi:10.1145/3767145.3767151

SIGACT News Complexity Theory Column 126 <b>Locally Decodable Codes for Insertions and Deletions</b>

2025· article· en· W4414234929 on OpenAlexaff
Elena Grigorescu

Bibliographic record

VenueACM SIGACT News · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDNA and Biological Computing
Canadian institutionsUniversity of Waterloo
Fundersnot available
KeywordsDecoding methodsHamming distanceSynchronization (alternating current)Hamming codeList decodingKey (lock)Hamming weight

Abstract

fetched live from OpenAlex

Local decoding enables fast recovery of individual symbols of a message, even in the presence of errors. Locally decodable codes that can withstand Hamming errors are foundational in theoretical computer science, with deep connections to program checking, probabilistically checkable proofs, private information retrieval, and data structures. More recently, the literature has expanded to address a much more challenging type of errors: insertions and deletions. These synchronization errors may cause misalignment in the data, and are especially relevant to emerging applications in DNA storage technologies. In this article, we survey recent advances on local decoding in the presence of synchronization errors, highlight key techniques, and state several open problems.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.009
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: Other
Teacher disagreement score0.038
Threshold uncertainty score0.127

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.009
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0020.003
Scholarly communication0.0060.006
Open science0.0020.002
Research integrity0.0030.010
Insufficient payload (model declined to judge)0.0380.016

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.030
GPT teacher head0.301
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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