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Record W4414243222 · doi:10.1111/pbi.70363

<scp> <i>ClAPRT3</i> </scp> ‐Mediated Adenine Salvage Pathway Enhances Purine Metabolites to Sustain Seed Vigour During Selfing in <scp> <i>Cunninghamia lanceolata</i> </scp>

2025· article· en· W4414243222 on OpenAlexaff
Houyin Deng, Ye Zhao, Jie Liu, Kunjin Han, Juan Han, Meng Ke, Ruping Wei, Yousry A. El‐Kassaby, Runhui Wang, Shu Yan, Yuhan Sun, Yun Li, Huiquan Zheng

Bibliographic record

VenuePlant Biotechnology Journal · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant tissue culture and regeneration
Canadian institutionsWestern Forest ProductsUniversity of British Columbia
FundersNational Natural Science Foundation of China
KeywordsMYBSelfingInbred strainRadicleHypocotylInbreeding depressionTranscriptomeInbreedingGene

Abstract

fetched live from OpenAlex

Selfing often causes inbreeding depression, especially during seed and seedling stages. However, some selfed progeny show low inbreeding depression with enhanced vigour, differing from inbred counterparts. This study investigates the molecular mechanisms maintaining seed vigour during selfing in Cunninghamia lanceolata. Evaluation showed that selfed seeds had medium vigour compared to other inbred and non-inbred seeds. Transcriptome analysis revealed similar gene expression patterns in the radicles and hypocotyls of inbred seeds. GO enrichment analysis identified adenine salvage as a key pathway related to seed vigour in selfed seeds. Purine metabolites (AMP, ADP, ATP) were higher in inbred seeds with better vigour, correlating with increased APRT enzyme activity. APRT inhibition by 6-diaminopurine had varying effects: high-vigour seeds were significantly inhibited, low-vigour seeds showed weaker inhibition, and selfed seeds exhibited an intermediate response. The addition of adenine and AMP partially restored seed vigour, further supporting the role of adenine salvage in vigour maintenance. A significant positive correlation (r > 0.922, p < 0.0001) between ClAPRT3 expression and APRT activity suggests that ClAPRT3 reflects APRT activity. Consistently, ClAPRT3 overexpression in Arabidopsis thaliana significantly enhanced radicle and hypocotyl length. Although ClMYB23 negatively regulates ClAPRT3 expression, no mutation was detected in the MYB binding motif among inbred progeny. Instead, variations in the ClAPRT3 coding sequence led to differences in binding energy with its ligand, which may partially explain the observed differences in APRT activity. These findings provide insights into the transcriptional and metabolic regulation of adenine salvage in maintaining seed vigour under inbreeding.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.224
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.208
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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