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Record W4414587706 · doi:10.1101/2025.09.24.678302

Shade Avoidance Restricts Soybean Breeding Progress and Increases Herbivore Susceptibility

2025· preprint· en· W4414587706 on OpenAlexaboutno aff
Lukas Vonmetz, Emanuel B Kopp, Simon Jäggi, Pascal A. Niklaus, Samuel E. Wuest

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicSoybean genetics and cultivation
Canadian institutionsnot available
FundersSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
KeywordsShade avoidanceHerbivoreCultivarSowingCompetition (biology)Crop yieldShadingYield (engineering)Thrips

Abstract

fetched live from OpenAlex

High planting densities expose field crops to competition for light, which typically induces shade avoidance responses such as stem elongation. While adaptive in natural environments, these responses can lower yield and increase susceptibility to stress in agricultural systems. We tested whether soybean breeding over the past century has altered shade avoidance and associated trade-offs. Twenty-one Canadian cultivars released between 1922 and 2018 were grown in pots under either control or shade-avoidance-inducing light conditions, achieved by altering reflected light spectrum without reducing photosynthetic radiation. Plants exposed to shade-avoidance-inducing light grew taller and suffered greater thrips damage, consistent with expectations of increased stem elongation and reduced defence. More recent cultivars showed higher susceptibility to thrips than older ones. Breeding progress in seed yield was driven largely by greater biomass allocation to seeds and reduced branching. However, under shade-inducing light, the yield improvements were smaller, pointing to shade avoidance as a limiting factor. Our results indicate that while soybean breeding has improved yield and shifted morphology towards ideotypes suited for high-density stands, persistent shade avoidance responses constrain breeding progress for yield and increase herbivore susceptibility. Breeding strategies that reduce sensitivity to neighbor cues may therefore improve soybean productivity and resilience.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.024
Threshold uncertainty score0.048

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.219
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicSoybean genetics and cultivationFrench-language works237,207