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Record W4415294309 · doi:10.1186/s44375-025-00006-w

The southern gap in ocean microbiome science

2025· article· en· W4415294309 on OpenAlexaff
Hugo Sarmento, Paula Huber, Célio Dias Santos Júnior, Andre Luis Abreu, Thulani P. Makhalanyane, Natasha Karenyi, Emma Rocke, Silvia G. Acinas, Linda Amaral-Zettler, Moacyr Araújo, Clara Arboleda-Baena, Giancarlo Bachi, Daniela Bănaru, Érica Caroline Becker, Marco Bellacicco, Fabio Benedetti, Chris Bowler, Bruno Buongiorno Nardelli, Lucia Campese, Donata Melaku Canu, Ulisse Cardini, Raffaella Casotti, Samuel Chaffron, Douglas Couet, Helena Cruz de Carvalho, Domenico D’Alelio, Giorgio Dall’Olmo, Nicole Dames, Colomban de Vargas, Cláudia Delgado, Céline Dimier, Damien Eveillard, Saliou Faye, J. Michel Flores, Pierre E. Galand, Louise Carin Gammage, Josep M. Gasol, Marion Gehlen, Andréa Green Koettker, Valeria A. Guinder, Tonje Marita Bjerkan Heggeset, Lars‐Éric Heimbürger‐Boavida, András Hidas, Cora Hörstmann, Federico M. Ibarbalz, Olivier Jaillon, David G. Johns, Ferenc Jordán, Pedro C. Junger, Karine Labadie, Rémi Laxenaire, Simone Libralato, Catherine Longo, Rubens M. Lopes, Matteo Loschi, Samuel K. Mafwila, Luigi Maiorano, Michael P. Meredith, Erik Muxagata, Giang‐Son Nguyen, Suzana Nicolau, Pedro H. Oliveira, Léa Olivier, Ricardo Oliveira, Nastassia Patin, Pablo Pita, Georg Pohnert, Antonella Ruggiero, Andrea Santarosa Freire, Martín Saraceno, Ralf Schwamborn, Alice Soccodato, Cosimo Solidoro, Diana Sousa, Sabrina Speich, Shinichi Sunagawa, Alessandro Tagliabue, Luke Thompson, Romain Troublé, Ludmilla Veado, Flora Vincent, Meike Vogt, Serena Zunino, Stéphane Pesant, Daniele Iudicone

Bibliographic record

VenueOcean Microbiology · 2025
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial Community Ecology and Physiology
Canadian institutionsThe Audio Recording Academy
FundersHorizon 2020Horizon 2020 Framework ProgrammeFundação de Amparo à Pesquisa do Estado de São PauloConselho Nacional de Desenvolvimento Científico e TecnológicoEuropean Commission
KeywordsMicrobiomeOcean scienceIndian oceanCitizen scienceHuman microbiome

Abstract

fetched live from OpenAlex

The ocean microbiome is at the forefront of science, and although most of the global ocean lies in the southern hemisphere, research efforts have historically been concentrated in the northern hemisphere, leaving important southern regions underexplored. Here, we address this geographic gap in ocean microbiome research, including sampling efforts, access to technology, and expert human resources. We showcase north–south and south-south collaborations and discuss the main challenges posed by parachute research, and collective efforts to avoid it and achieve shared capacity, equitable access to knowledge, and shared benefits. Our recommendations emphasize the importance of actively involving students and researchers from low- and middle-income countries from the global south in co-designing global ocean microbiome research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.049
metaresearch head score (Gemma)0.036
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.049
Threshold uncertainty score0.258

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0490.036
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0030.004
Science and technology studies0.0040.008
Scholarly communication0.0080.012
Open science0.0010.016
Research integrity0.0030.008
Insufficient payload (model declined to judge)0.0170.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.228
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2025
Admission routes1
Has abstractyes

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