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Record W4415825595 · doi:10.1101/2025.10.31.681727

B Cell-Induced Lymph Node Stromal Remodeling Compromised Neutrophil Response to Secondary <i>Staphylococcus aureus</i> Infection

2025· preprint· W4415825595 on OpenAlexafffund
Jingna Xue, Darellynn Oo, Nicole L. Rosin, Jeff Biernaskie, Peng Huang, Shan Liao

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsUniversity of Calgary
FundersCanadian Institutes of Health Research
KeywordsStromal cellLymphotoxinImmune systemCXCL13Reticular cellCCL19Lymph node stromal cellInflammation

Abstract

fetched live from OpenAlex

Abstract The lymph node (LN) stromal cells create niches, regulate lymph drainage, and guide the migration, positioning, and activation of immune cells within the LN. Upon stimulation, the stromal cells respond dynamically to accommodate the massive expansion of immune cells in the LN. However, there is still a limited understanding of how niche-associated stromal cell subsets are remodeled and how this remodeling reshapes host immune protection. In an oxazolone (OX)-induced skin inflammation model, we found that LN remodeling weakened the neutrophil response to secondary Staphylococcus aureus ( S. aureus ) infection in the inflamed LN, whereas depleting B cells rescued the responses. To understand the mechanism, we used single-cell RNA sequencing (scRNAseq) to characterize alterations in fibroblastic reticular cell (FRC) subsets and identified a new FRC subset expressing an intermediate level of CXCL13 (Cxcl13 int RCs) in the inflamed LN. Further studies revealed that Cxcl13 int RCs replaced Ccl19 lo FRCs in the interfollicular zones (IFZs) of the inflamed LN, leading to a compromised conduit network. Depleting B cells preserved the integrity and function of the FRC-conduit network within the IFZ. Finally, the induction of Cxcl13 int RCs depended on the B cell-derived lymphotoxin signaling. The induced Cxcl13 int RCs were transitional, creating a time window of comprised immune protection during the OX-inflammation. This study elucidated a mechanism underlying LN stromal remodeling and provides proof-of-principle evidence that B cell-stromal interactions may be a novel target to enhance host immunity in diseased conditions.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.217
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

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