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Record W4415914843 · doi:10.1101/2025.11.03.686299

Shell-bound archives: uncovering nematode encapsulations in the Galapagos’ largest radiation

2025· preprint· W4415914843 on OpenAlexaff
Alexandre Fuster‐Calvo, Ian M. Oiler, A. Andrew M. MacDonald, Christine Parent, François Massol, Gustavo Burin, John G. Phillips, Robbie Rae, Dominique Gravel

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Language
FieldEnvironmental Science
TopicParasite Biology and Host Interactions
Canadian institutionsUniversité de Sherbrooke
Fundersnot available
KeywordsMacroevolutionSnailNematodeAdaptive radiationPhylogenetic treeTraitHost (biology)Phylogenetics

Abstract

fetched live from OpenAlex

Abstract How macroevolution interacts with ecological networks remains a major question in eco-evolutionary science. We investigate this interplay in the Naesiotus snail radiation of the Galápagos Islands, which encapsulates parasitic nematodes within the shell—a recently discovered gastropod defense. Using a natural history collection, we examined dry shells from 47 species across 12 islands, quantified encapsulations, and sequenced nematode DNA to reconstruct a host-parasite network. Encapsulations were widespread and revealed high nematode diversity, including in snail hosts presumed extinct. Nematode diversity was shaped by habitat, while encapsulation load was better explained by host species identity, suggesting species-specific defenses. Neither trait showed phylogenetic signal, and shell brightness was unrelated to nematode interactions. Similarly, host diversification rate did not predict network position, suggesting that macroevolution may leave a weak or obscured imprint on this host-parasite network. This snail-nematode system in islands readily enables integration of ecological networks, phylogeny, functional traits, and biogeography.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.268
Teacher spread0.256 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

Explore more

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