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Record W4416023210 · doi:10.1101/2025.11.07.687234

HDAC2 inhibition restores H4K16 Acetylation and Rescues Cellular Senescence in Hutchinson-Gilford progeria syndrome

2025· preprint· W4416023210 on OpenAlexafffund
Rana Karimpour, Mzwanele Ngubo, William L. Stanford, Michael J. Hendzel

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicNuclear Structure and Function
Canadian institutionsOttawa HospitalUniversity of Alberta
FundersCanadian Institutes of Health Research
KeywordsHistone deacetylase 2ChromatinHistone deacetylaseAcetylationSIRT6Premature agingHistoneHistone H4DNA repair

Abstract

fetched live from OpenAlex

Summary Histone H4 lysine 16 acetylation (H4K16ac) controls chromatin compaction, replication-coupled chromatin maturation and double-strand break repair, and is depleted in Hutchinson–Gilford progeria syndrome (HGPS) vascular smooth muscle cells (VSMCs). To identify the enzymes that set steady-state H4K16ac, we depleted KAT5, KAT8, all eleven zinc-dependent HDACs and all seven sirtuins in HeLa and U2OS cells, then in unaffected control and HGPS VSMCs. KAT8 depletion markedly reduced H4K16ac; KAT5 depletion had little effect. Among erasers, HDAC2 was dominant: its depletion or overexpression bidirectionally modulated H4K16ac, HDAC1 did neither, and SIRT1 depletion raised H4K16ac in these lines but far less in HGPS VSMCs. HDAC2-directed inhibitors (BRD4884, MI192, Santacruzamate A) restored H4K16ac in HGPS VSMCs, whereas the SIRT1 inhibitor EX527 did not. They also improved nuclear architecture, reduced γH2AX signaling, preserved Ki67 positivity across serial passage, and limited senescence-associated β-galactosidase accumulation. HDAC2 is therefore the predominant class I regulator of steady-state H4K16ac and a candidate target for limiting senescence in HGPS VSMCs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.201
Teacher spread0.195 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

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Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicNuclear Structure and FunctionFrench-language works237,207