Are i‐Motif Structures in DNA Compatible with Cytosine–Ag(I)–Cytosine Base Pairs?
Bibliographic record
Abstract
Abstract To evaluate whether the protons of hemi‐protonated C:CH + base pairs in DNA i‐motif structures can be replaced by silver ions, an i‐motif/duplex junction (IDJ) known to be stable at pH 7 was investigated. Interestingly, only the most accessible out of five C:CH + pairs in the structure can be converted into a C–Ag I –C base pair, as was derived by 1 H NMR spectroscopy, luminescence spectroscopy, temperature‐dependent UV spectroscopy, and isothermal titration calorimetry (ITC). When more than one silver ion is present per IDJ, dynamic light scattering (DLS) and CD spectroscopy indicate that the IDJ rearranges into a larger aggregated structure, likely to contain non‐canonical silver‐mediated base pairs. The study suggests that—in contrast to earlier reports—the DNA i‐motif in general is not compatible with the formation of contiguous C–Ag I –C pairs.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".